Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02117 ATGGATTGTGGGGGTAAGATCGGTGGAGGAACTGAGCGAGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAGTGTGTGAAGGGTTGCATTTTCGCACCATACTTTGACTCCGACCAAGGAACGGCTCATTTTGCTGCGGTGCACAAGGTGTTTGGTGCTAGCAATGCCTCTAAGCTACTCATGAGAATCCCTGCACACAAACGTCTTGATGCTGTTGTTACCCTTTGCTATGAGGCTCTTGCTAGGACTAGAGACCCCGTTTATGGTTGTGTTGCTCACCTCTTTGCTCTTCAACAACAGGTGATGAACTTGCAAGCTGAGTTAACCTATGTCCAGGCCCGTCTAGCAACAATGCGCATGCCAATGCAAGTAGCTCCTCTTCCACACCCTCAAACATCATCACCACTAACTCTTCATTCCTCAGATCATTTGGCATCAAATGCTGACTTGCAAAGTGCCCCTATGCACCTTGATCCAATTCTTCCGTTAGAATTAAGTAATGTTTTCAATCCATCAGATCAACAACTCGAGGATAGGGAACTCCAAGCTTTGGCACGAGAATTTGTCACAAGATACTTGCCTGGAGTAAGATTCCAGCCTTCAAACTCTCCCTGA 621 0.4734 MDCGGKIGGGTERGGPCGACKFLRRKCVKGCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARTRDPVYGCVAHLFALQQQVMNLQAELTYVQARLATMRMPMQVAPLPHPQTSSPLTLHSSDHLASNADLQSAPMHLDPILPLELSNVFNPSDQQLEDRELQALAREFVTRYLPGVRFQPSNSP 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02117 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 11 196 - -
Cca01g02117 206 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 196 - -
Cca01g02117 206 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Cca01g02117 206 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02117 Cca-Chr1 48601465 48606449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02117 8 204 AS2 family AT4G00210 53.636 1.42e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca01g02117 LOB 9.2e-37 No_clan