Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02115 ATGGAAGCCAGAGAAGGCATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTACCATGTGGCGCCGAGGAGTGAGGCTCCAAACCAGGTTCATGTCCCtgatggtggtggcggcggcggaggtggtggtggtggtgCAGCTCTTGGTGTATCACCTGTGAATGTGGGGTTGGATGGAACATCAGTTAAGAAGAAACGGGGTAGACCAAGGAAATATGGGCCTGATGGGTCTGTTACTATGGCATTGTCACCAATGCCAATATCGTCGTCTGCTCCGTCCTCTAATGACTTCTCATCGGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGGCTTCCAAGAAAGTTGGTTTGGATTATCTAGGTGACTTTAATGCGTGCTCTGATGGTACAAATTTTATGCCACATATCATCACTGTCAATGCTGGCGAGGACATTACAATGAAGGTGATATCCTTTTCTCAACAAGGGCCACGAGCTATATGTATCTTATCTGCTAATGGTGTGATTTCAAATGTTACTCTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCTGGTGGAATGTCTGTCTCGTTGGCTAGCCCTGACGGCCGTGTTGTAGGTGGTGGTGTAGCTGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTTGGAAGCTTTCTACCAAGCAGCCAGCAAGAACAAAAACTAAAGAAGTCCAAGTCTACTGATTATGCAGCAGCCACTGTTACTCCAGCCATTGCAGTGTCTTCTGCACCACCACCTCCAACCAATGCTGAGAAAGAGGATGTGAATGTGATGGGTGGTGCACATGTACTGCAAAATTCTGGAACCCTTAACACAAACCTCACTGCCCCTAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACACTATGCCTGACTCTAGAAAGTCAGCTACTGATATTAACATATCTTTGCCTGATTGTTAA 1050 0.4533 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGGGGGGGGAALGVSPVNVGLDGTSVKKKRGRPRKYGPDGSVTMALSPMPISSSAPSSNDFSSGKRGKMRGMDYKASKKVGLDYLGDFNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKLKKSKSTDYAAATVTPAIAVSSAPPPPTNAEKEDVNVMGGAHVLQNSGTLNTNLTAPNAFRRDNWVNMHTMPDSRKSATDINISLPDC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02115 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Cca01g02115 349 ProSiteProfiles PPC domain profile profile. 134 276 IPR005175 -
Cca01g02115 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 258 - -
Cca01g02115 349 MobiDBLite consensus disorder prediction 86 104 - -
Cca01g02115 349 Gene3D - 139 275 - -
Cca01g02115 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 348 IPR039605 GO:0003680
Cca01g02115 349 MobiDBLite consensus disorder prediction 22 106 - -
Cca01g02115 349 CDD DUF296 139 229 IPR005175 -
Cca01g02115 349 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02115 Cca-Chr1 48562623 48569220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02115 10 346 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.632 4.15e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02115 - - gmx:100796830 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01815 07 44706310 44711688 Cca01g02115 01 48562623 48569220 PCT