Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02114 ATGGAAAAGTGTGTTTGGTGTTTCCTAATTGTGATGCTACCATCTCTTATTATTGCTACCATCAATGAGGAAAGACAGGCTTTGCTCAAGAGCGGGTGGTGGAATCATTACCGAAATATCTCAAATCATTGTGCCAATTGGGAGGGAATCCTTTGTAATGAAGCTGGAAGTGTGACTGAGATTTACACACCTTTGGTCATTCAATCACAAGAATTGCTGCGGATTCAGAACTTGAACCTCTCTGCCTTCCCCAATTTACAGATTCTATATTTAGATGGAATGGGTCTTAGGGGAAGGATCCCTGAAGAAATAAGCACACTTACAAACCTTAATTATCTTGACCTGTCCAGCAATTGTCTTCACGGTTCAATACCACTACAGCTTGCTAATTTGACCCAATTGAAAGGATTATTTCTCTATAATAATTCACTAACGGGTTCAATCCCATCTACATTGGGTCAATCCAGGAATTTGACACATCTCTTCCTTGACTCTAACCAACTTACCCATTCCATACCTAGAGAGTTAGGAAACTTGACACTGTTAAAATTATTAAATCTATCACGTAACTCTCTTTTTGGTTCAATACCTTCAGAGATTGGAAAAGCCACCAGACTCTTAGACATAGACCTTTCCCACAACAATCTTACAGGATCCATCCCACCTCCAATCCTCCAATGCCCACATATCAAAAAAGTGGATTTAAGCCACAACTTATTAAATGGCACCATCACTTCCCAAATAAATCATGTTCATAACCTCAACCTTAGCCATAATTTTTTGAATGGTGAAGTTCCATATCTCTGGGAAACATATTCCATGTTAGATAGTTTGGATATTAGCTATAACAATTTCACAGGTAAATTACACAAGGAACTTGCTAATTTATCATACGTAAATCTTTCATATAATTCCTTTGACTTCTCACAAGACCTTGAGTCAAACTTAGAGTTACCAGACTATTGTTATTTTAAGGTAGACTCGTTAATTGGTTACCACATGCCAAACTTCACATCTTGCCACATTAATAGTCACAATGTTACCCACCAAACCAATCCTGGAACTAGAAAAGGCAAGACTTCCTTGTTAATTGTTATTCCTATCGTTTGCTTCATTCTTTTGGTAATTCTTACAGCATTATATTTCACAAGAAGCAAATTTAAGACCAAACTTGAAGGAATATCAACAAAAAATGGAGACTTGTTTTCTGTATGGAACTATGATGGTAAAATTGCATTTGATGACATCATTGAAGCAACTGAAGACTTTGACATCAAGTATTGCATTGGGACCGGTGCATATGGCAGTGTTTATAGAGCCCAATTGCCGAGTGGCAAAATTGTTGCATTGAAGAAACTTCACCAAATGGAATCTCATAATACATCTTTTGTCAAAAGCTTTTGCAATGAGGTCAAGATGTTAACAAAAATTCGTCACAGAAACATCGTAAAGCTTCATGGCTTTTGCCTCCACAATCGTTGCATGTTTCTTGTCTATCAATATATGGAAAGAGGTAGCTTATTTTCAATCTTGAATAATGATGTGGAAGCTGAGGAGTTAAATTGGAGCAAGAGGGTGAATGTCATCAAAGAAATGGCATGTGCTTTGTCCTACATGCATCATGATTGTACCCCACCCATTGTTCATCGAGATGTAACAAGTAGCAATGTTCTATTAAACTCACAATTAGAGGCTACTGTTTCAGACTTTGGCACAGCCAGGCTCCTTGATCCTGATTCCTCAAATCAAACCTTGGTAGCTGGCACATATGGCTACATTGCCCCAGAGCTTGCTTATACATTGAATGTCACAGAAAAATGGGATGTTTATAGTTTTGGAGTTGTGGCTCTTGAAACATTAATGGGAAGACATCCTAAAGAGCTAATCTCATCTTTATCCAATTCAACTACTCAAAACATGTTGTTGAAGGACCTCTTAGATACACGTCTTCCTCTTCCTAACTTTCGAAAAGACGCTCAAAATATAATGCTTGTGGTAACTATAGCATTAGCATGTTTGTGTTCCAAACCAAAGTTCAGGCCATCAATGCAAGATGTGAGTTGGGAGCTCTCTAATTTCAAAATGACATTGCCTTTATCTTTCCATCAGATTTCAATCCATGAGATGATGACCAAAGAAATATGTAGTCTTTCGTGCAAGTATCAAGAAAGAAATATAAAAGGCAAAAATTAA 2193 0.3735 MEKCVWCFLIVMLPSLIIATINEERQALLKSGWWNHYRNISNHCANWEGILCNEAGSVTEIYTPLVIQSQELLRIQNLNLSAFPNLQILYLDGMGLRGRIPEEISTLTNLNYLDLSSNCLHGSIPLQLANLTQLKGLFLYNNSLTGSIPSTLGQSRNLTHLFLDSNQLTHSIPRELGNLTLLKLLNLSRNSLFGSIPSEIGKATRLLDIDLSHNNLTGSIPPPILQCPHIKKVDLSHNLLNGTITSQINHVHNLNLSHNFLNGEVPYLWETYSMLDSLDISYNNFTGKLHKELANLSYVNLSYNSFDFSQDLESNLELPDYCYFKVDSLIGYHMPNFTSCHINSHNVTHQTNPGTRKGKTSLLIVIPIVCFILLVILTALYFTRSKFKTKLEGISTKNGDLFSVWNYDGKIAFDDIIEATEDFDIKYCIGTGAYGSVYRAQLPSGKIVALKKLHQMESHNTSFVKSFCNEVKMLTKIRHRNIVKLHGFCLHNRCMFLVYQYMERGSLFSILNNDVEAEELNWSKRVNVIKEMACALSYMHHDCTPPIVHRDVTSSNVLLNSQLEATVSDFGTARLLDPDSSNQTLVAGTYGYIAPELAYTLNVTEKWDVYSFGVVALETLMGRHPKELISSLSNSTTQNMLLKDLLDTRLPLPNFRKDAQNIMLVVTIALACLCSKPKFRPSMQDVSWELSNFKMTLPLSFHQISIHEMMTKEICSLSCKYQERNIKGKN 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02114 730 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 24 289 - -
Cca01g02114 730 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 166 708 - -
Cca01g02114 730 SUPERFAMILY Protein kinase-like (PK-like) 409 689 IPR011009 -
Cca01g02114 730 ProSitePatterns Protein kinases ATP-binding region signature. 429 451 IPR017441 GO:0005524
Cca01g02114 730 Gene3D Ribonuclease Inhibitor 150 249 IPR032675 -
Cca01g02114 730 Gene3D Phosphorylase Kinase; domain 1 385 501 - -
Cca01g02114 730 ProSiteProfiles Protein kinase domain profile. 423 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02114 730 Pfam Protein kinase domain 427 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02114 730 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 24 289 - -
Cca01g02114 730 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 166 708 - -
Cca01g02114 730 ProSitePatterns Tyrosine protein kinases specific active-site signature. 547 559 IPR008266 GO:0004672|GO:0006468
Cca01g02114 730 SUPERFAMILY L domain-like 41 306 - -
Cca01g02114 730 Gene3D Ribonuclease Inhibitor 250 319 IPR032675 -
Cca01g02114 730 Gene3D Ribonuclease Inhibitor 18 149 IPR032675 -
Cca01g02114 730 Gene3D Transferase(Phosphotransferase) domain 1 502 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02114 Cca-Chr1 48557108 48559763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02114 93 595 Receptor kinase-like Gene Family AT4G08850 38.973 1.76e-109 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca01g02114 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02114 - - gmx:102667972 901.738