Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02105 ATGGAAGATTCTAATCAGCCGGCCGAGTCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTCTTCAGAAAACCTGTTAATAGAAAGAATATAAGGAAGCGGACTATTGAGAATGAAGATAATGAGGAGGAGGACTCAAACAAAGAAACTTCTCTATTGCATATTCAGAAAAAGACTTTAAAGCCTGACAATAAATTGTACTTTTCCACTGGCTCTTCAAAAGCCTCTGCATCTGTTGTACCAAGTGAAGAATCTGGAAAACCAGTCTTTCAGTTCGAGTCTTCAAAAAATATTCAAGTTCAACATGATAATAAAGCAACAGCAACTCTAGAGACCGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCACTTAAGCAAGCAGCAGAGAGTCTTAAAGGGACAAGCACAAGTTCTAAGGATGAAAAATTATATAAGGGAATTAACAATTACAATGACTACAAGGCTGGGTTTCGTAGGGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGATCTCATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAACCTGACATATGTAAGGATTATAAGGAAACGGGATACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCAGGGTGGCAGTTGGACAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGATGATGCAGATGAGGAGGGGGGCGCTAATTTGACTGATGAAGATGATGAAGATTCGTTACCCTTTGCATGTTTCATTTGTAGAAACCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCTGAGGATAAAATTAAATGA 999 0.4034 MEDSNQPAESAENQQTEQVCSFFRKPVNRKNIRKRTIENEDNEEEDSNKETSLLHIQKKTLKPDNKLYFSTGSSKASASVVPSEESGKPVFQFESSKNIQVQHDNKATATLETETEFSKDARAIRERALKQAAESLKGTSTSSKDEKLYKGINNYNDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLDKEWEEAEKARKMRLAAGDDADEEGGANLTDEDDEDSLPFACFICRNPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKIK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02105 332 SMART ring_2 271 308 IPR001841 -
Cca01g02105 332 ProSiteProfiles Zinc finger C3H1-type profile. 193 221 IPR000571 GO:0046872
Cca01g02105 332 MobiDBLite consensus disorder prediction 1 52 - -
Cca01g02105 332 SMART c3hfinal6 193 220 IPR000571 GO:0046872
Cca01g02105 332 Pfam Zinc finger, C3HC4 type (RING finger) 270 312 - -
Cca01g02105 332 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 219 IPR000571 GO:0046872
Cca01g02105 332 SUPERFAMILY CCCH zinc finger 192 224 IPR036855 GO:0046872
Cca01g02105 332 PANTHER ZINC FINGER PROTEIN 183 9 330 IPR039971 -
Cca01g02105 332 SUPERFAMILY RING/U-box 270 313 - -
Cca01g02105 332 Gene3D - 191 225 - -
Cca01g02105 332 MobiDBLite consensus disorder prediction 64 81 - -
Cca01g02105 332 ProSiteProfiles Zinc finger RING-type profile. 271 309 IPR001841 -
Cca01g02105 332 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 9 330 - -
Cca01g02105 332 MobiDBLite consensus disorder prediction 1 22 - -
Cca01g02105 332 CDD RING-HC_RNF113A_B 269 309 - -
Cca01g02105 332 MobiDBLite consensus disorder prediction 64 84 - -
Cca01g02105 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 328 IPR013083 -
Cca01g02105 332 MobiDBLite consensus disorder prediction 32 52 - -
Cca01g02105 332 ProSitePatterns Zinc finger RING-type signature. 286 295 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02105 Cca-Chr1 48452440 48455849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02105 7 332 C2H2 Transcription Factor Family AT1G01350 68.405 1.01e-164 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca01g02105 zf-C3HC4_3 9e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02105 K13127 - gmx:100787434 619.772