Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02101 ATGGCAAAGTGTGTTTGCAGTTTATTAGTAATTATGATGCTACAATCACATTCATATCTTATTGGTAGCAGCATGCCAATTTCTTCTAATTTGTCATCCATAAATGAGGAACGACATGCTTTGCTCCAGAGCGGTTGGTGGAACCATAACCTAAGTATCTCACGCCATTGTGAATGGGTAGGTATTACTTGTAATGAAGCTGGAAGTGTTACAGAGATAGATCTATATGATCCTCCATCCAAAGAATTGCGGCGGATTCAGAACTTGAACCTCACTGCCTTCCCCAATTTAGTCGTTCTAGATCTATATGGAATGGGTCTTACAGGAAGCTTTCCAACAGAAGTAACCACACTTAAAAACCTTACCTATCTTTATCTAACCCATAATCATCTTCATGGTTCAATACCGGTCCAAGTAGGAAATTTGACACAATTAGTGGATTTGTGTCTTTATAATAATTCACTAACGGGTTCAATTCCTTCTACTTTGGGTAAATTGAAGAATTTGCAGTATCTCCTTCTTTCGTTCAACCGACTTGAAGGAACCATACCAACAGAACTGGGGAACTTAACACAATTGAAAGAATTTTATCTTTCAAACAATTTACTCAACGGTTCAATCCCTTCTACTTTGGCCTTATATTTCACAAGAAGCAAGTCTAGAACCAAAGTTGAAGGAGGATTAGCAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGAAAAATTGCATTTGAAGATATCATTGAAGCAACCGAGGACTTTCACATCAAGTATTGCATTGGGACTGGTGCATATGGTAGTGTCTATAGAGCTCAATTGCCGAATGGCAAAATTGTTGCATTGAAGAAACTACACCAAATGGAATCTCAAAATCCATCTTTTGACAAAAGTTTTCGCAATGAAGTCAAGATGTTAACAGAAATTCGTCATAAAAATATTGTAAAGCTTCATGGTTTTTGCCTCCACAATCGATGCATGTTTCTAGTCTATCAATACATGGAAAAAGGTAGCTTATTTTATGTCTTGAATAATGACGTAGAAGCTAAGGAGTTGAATTGGAGTAAAAGGGTGAATATCATTAAAGGAATGGCACATGCTTTGTCCTACATGCACCATGACTGTACCCCACCAATTATTCATCGAGATGTAACAAGTAGCAATGTTTTGTTAAACTCACAATTAGAGGCATTTGTCTCAGACTTTGGCACTGCTAGACTCCTTGATCCCGATTCTTCAAATCAAACCTTGGTAGTTGGCACATATGGCTATATTGCCCCAGAGCTTGCCTACACATTCATTGTGACAGAAAAATGTGATGTTTATAGTTTTGGAGTGGTAGCTTTAGAAACATTAATGGGAAGGCATCCTGGAGAGCTAATCTCATCTTTATCAAACCCAACTACTCAAAACATGTTGTTGAAAGATCTCTTGGATTCACGTCTTCCCCTTCCTCGCTTTCAAAAAGATGCTCAAGATATAATGCTTGTGGTAGCAATAACATTGGCATGTTTGTGTTCCAAACCGAAGTTCAGACCATCAATGCTACAAGTGGCTAAGGAACTCTCTAGTTTCAAATTGTCATTGTCTTTGCCTCTCCATGAAATTTTGATCCATCAATTGATGACTATAAAAGATACGATCCAAGTGTCAATGAAATCTGGTAATCAAATGCATTTTTCTAGTTTTCAGTGA 1698 0.374 MAKCVCSLLVIMMLQSHSYLIGSSMPISSNLSSINEERHALLQSGWWNHNLSISRHCEWVGITCNEAGSVTEIDLYDPPSKELRRIQNLNLTAFPNLVVLDLYGMGLTGSFPTEVTTLKNLTYLYLTHNHLHGSIPVQVGNLTQLVDLCLYNNSLTGSIPSTLGKLKNLQYLLLSFNRLEGTIPTELGNLTQLKEFYLSNNLLNGSIPSTLALYFTRSKSRTKVEGGLAKNGDLFSIWNYDGKIAFEDIIEATEDFHIKYCIGTGAYGSVYRAQLPNGKIVALKKLHQMESQNPSFDKSFRNEVKMLTEIRHKNIVKLHGFCLHNRCMFLVYQYMEKGSLFYVLNNDVEAKELNWSKRVNIIKGMAHALSYMHHDCTPPIIHRDVTSSNVLLNSQLEAFVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTFIVTEKCDVYSFGVVALETLMGRHPGELISSLSNPTTQNMLLKDLLDSRLPLPRFQKDAQDIMLVVAITLACLCSKPKFRPSMLQVAKELSSFKLSLSLPLHEILIHQLMTIKDTIQVSMKSGNQMHFSSFQ 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02101 565 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 215 542 - -
Cca01g02101 565 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 32 211 - -
Cca01g02101 565 ProSiteProfiles Protein kinase domain profile. 256 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02101 565 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Cca01g02101 565 Pfam Protein kinase domain 257 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02101 565 ProSitePatterns Tyrosine protein kinases specific active-site signature. 380 392 IPR008266 GO:0004672|GO:0006468
Cca01g02101 565 Gene3D Ribonuclease Inhibitor 31 223 IPR032675 -
Cca01g02101 565 SUPERFAMILY L domain-like 46 212 - -
Cca01g02101 565 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Cca01g02101 565 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 215 542 - -
Cca01g02101 565 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 32 211 - -
Cca01g02101 565 Gene3D Phosphorylase Kinase; domain 1 224 334 - -
Cca01g02101 565 SUPERFAMILY Protein kinase-like (PK-like) 242 523 IPR011009 -
Cca01g02101 565 Gene3D Transferase(Phosphotransferase) domain 1 335 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02101 Cca-Chr1 48357285 48360023 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02101 91 428 Receptor kinase-like Gene Family AT4G08850 41.995 8.86e-85 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca01g02101 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02101 - - aprc:113851126 590.882