Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02099 ATGCTTGTGTGTGCTAGTTCTTCACACCAGCCATGGGCCTCACCCATACCAACACTCACCACGCTCTCAAAATGCACAACCACAGAGCACGTAGACCAGCTTCACGCACGCATGATCACAACGGGCTTCATCAAAAGCCCCTCCCTCACCACCAGGCTCGTTCTCTCTTTCATTTCCTCACCCCACGAGCCTCTCGTCGAGTTCGCACGCTATGTCTTCTTCAAGCACCAGGCTTTTCGCGACCCTTTTCTCTGGAACACCGTGATCAGGTCCCACTCTCATGGCTCTGACCCCAAAAGGGCTCTGATTGTGCTCCGCTTGATGCTCGAAGATGGGGTGCGTTTGGATGAGTACTCGTTTTCCCTCGCTTTGAAGGCTTGTGCCAAAGTGGGGTTGGTGAGGGAGGGAATGCAAGTTCACGGGCTGCTGTGGAAAATGGATTTTGGGGAAGATGTGTTCTTGCGGAATTGTTTGATTGGTTTGTTTGTGAGATGTGGGTGTATTGAGCTTGCACGCCAGGTGTTTGATAGAATGCCTGACCGGGATGTTGTTTCTTATAACTCGATGATTGATGGGTATGTGAAGTGTGGGGCGGTTGAGAGGGCGCGGGAGTTGTTTGATGGTATGGGGGAGAGGAATTTGATTACTTGGAATTCGATGATTGGAGGGTATGTGAGGTGGGAAGAGGGGGTGAGGTTTGCTTGGAGTTTGTTTGTTAAAATGCCTGAGAGGGACTTGGTTTCGTGGAACACGATAATCGATGGTTGTGTGAAGCATGGGAAGATGGAGGATGCTCGGGCGTTGTTTGACGAGATGCCGGATAGGGATTCGGTCAGTTGGGTTACCATGATTGACGGTTACGCGAAGTCGGGTGATGTTCTTGCGGCGAGGTTGTTGTTTGATGAAATGCCGAGGAGAGATGTTGTTTCTTGTAATTCGATGATGGCTGGATATGTTCAGAATGGTTATTGCATTGAGGCTTTGAAAATATTTCATGACATGAGAAGGGCAACTAATGTGGTTCCTGATGAAACTACTTTGTTGATTGTTCTCACAGCATTTGCTCAATTAGGATACGTTGAAGATGGAGTTGTGGTACATAATTATTTAGTGGAGAAGGGCTACTCTCTGAATGGTAAACTTGGTGTTGCTCTAATTGACATGTATTCAAAGTGTGGTAGCATTGAGAATGCTATCTCAGTGTTTGAGAGTGTTGAACAAAAATGTGTTGATCATTGGAATGCTATGATCGGTGGCTTAGCTATTCATGGAATGGGTGAAATGGCTTTTGATTTTCTCTTGGAGATGGGAAGGCTTTGTATTATTCCTGATGATATCACTTTCATTGGGGTGTTGAGTGCTTGTAGGCATGCTGGCATGTTGAAGGAGGGACTCATATGTTTCGAGCTCATGCAAAAGGTATACAAGCTGGAACCTAAAGTGCAGCACTTTGGATGCATGGTGGATATGCTTAGCCGCGCAGGGCATGTTGAAGAAGCCAAGAAACTCGTGGAGGAGATGCCTGTTGAACCAAATGATGTGATTTGGAAGACTCTACTTAGTGCTTGCCAAATTTATGAAAATTTCTCTATAGGGGAGCCTATAGCTCAGCAAATGATTCAGCTATATTCATGCAGTCCAAGTTCCTATGTGCTTCTGTCTAATATTTATGCCAGTTTGGGCATGTGGGACAATGTAAAGAGGGTTAGGACAGAAATGAAAGCAAGAGAATTAAAGAAAATTCCAGGTTGTAGTTGGATTGAACTGGGGGGAATTGTTCACCAATTCTCTGTACAAGATAGGACACACCCTCAGACAAGCGCAGCAGACAGAGAGTGTCGTCCTTCAAACGCAGTCACCATGGGGCGTATGCACAGTCGCGGTAAGGGTATCTCCAGTTCGGCTCTTCCCTATAAGAGGACCCCACCTAGCTGGCTCAAGATCTCTTCCCAGGATGTGGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTTACTCCATCTCAAATCGGTGTGATTCTTCGAGACTCTCATGGAATTGCTCAGGTGAAGAGTGTCACTGGAAGCAAGATTCTCCGTATATTGAAGGCTCATGGCCTTGCTCCTGAAATTCCTGAAGATTTGTATCACCTCATCAAGAAGGCTGTCTCTATTAGGAAGCACTTGGAGAGGAACAGGAAGGACAAGGACTCTAAATTCAGGTTAATTTTGGTTGAGAGCAGGATTCACCGTCTTGCCCGGTACTACAAGAAGACAAAGAAGCTTCCACCTGTGTGGAAATATGAATCAACAACTGCCAGCACTCTCGTGGCTTAG 2316 0.4637 MLVCASSSHQPWASPIPTLTTLSKCTTTEHVDQLHARMITTGFIKSPSLTTRLVLSFISSPHEPLVEFARYVFFKHQAFRDPFLWNTVIRSHSHGSDPKRALIVLRLMLEDGVRLDEYSFSLALKACAKVGLVREGMQVHGLLWKMDFGEDVFLRNCLIGLFVRCGCIELARQVFDRMPDRDVVSYNSMIDGYVKCGAVERARELFDGMGERNLITWNSMIGGYVRWEEGVRFAWSLFVKMPERDLVSWNTIIDGCVKHGKMEDARALFDEMPDRDSVSWVTMIDGYAKSGDVLAARLLFDEMPRRDVVSCNSMMAGYVQNGYCIEALKIFHDMRRATNVVPDETTLLIVLTAFAQLGYVEDGVVVHNYLVEKGYSLNGKLGVALIDMYSKCGSIENAISVFESVEQKCVDHWNAMIGGLAIHGMGEMAFDFLLEMGRLCIIPDDITFIGVLSACRHAGMLKEGLICFELMQKVYKLEPKVQHFGCMVDMLSRAGHVEEAKKLVEEMPVEPNDVIWKTLLSACQIYENFSIGEPIAQQMIQLYSCSPSSYVLLSNIYASLGMWDNVKRVRTEMKARELKKIPGCSWIELGGIVHQFSVQDRTHPQTSAADRECRPSNAVTMGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02099 771 SUPERFAMILY S15/NS1 RNA-binding domain 686 762 IPR009068 -
Cca01g02099 771 Gene3D Tetratricopeptide repeat domain 231 383 IPR011990 GO:0005515
Cca01g02099 771 Gene3D Tetratricopeptide repeat domain 384 627 IPR011990 GO:0005515
Cca01g02099 771 Gene3D Tetratricopeptide repeat domain 20 142 IPR011990 GO:0005515
Cca01g02099 771 Pfam PPR repeat 412 438 IPR002885 -
Cca01g02099 771 Pfam PPR repeat 215 243 IPR002885 -
Cca01g02099 771 Pfam PPR repeat 84 113 IPR002885 -
Cca01g02099 771 Pfam PPR repeat 247 275 IPR002885 -
Cca01g02099 771 Pfam PPR repeat 384 408 IPR002885 -
Cca01g02099 771 Pfam PPR repeat 484 508 IPR002885 -
Cca01g02099 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Cca01g02099 771 CDD Ribosomal_S15p_S13e 690 763 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca01g02099 771 Gene3D - 655 702 - -
Cca01g02099 771 Gene3D - 703 771 - -
Cca01g02099 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 166 226 - -
Cca01g02099 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 163 - -
Cca01g02099 771 SMART Ribosomal_S15_2 690 769 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca01g02099 771 TIGRFAM PPR: pentatricopeptide repeat domain 309 344 IPR002885 -
Cca01g02099 771 TIGRFAM PPR: pentatricopeptide repeat domain 156 184 IPR002885 -
Cca01g02099 771 TIGRFAM PPR: pentatricopeptide repeat domain 278 309 IPR002885 -
Cca01g02099 771 TIGRFAM PPR: pentatricopeptide repeat domain 484 507 IPR002885 -
Cca01g02099 771 TIGRFAM PPR: pentatricopeptide repeat domain 247 276 IPR002885 -
Cca01g02099 771 TIGRFAM PPR: pentatricopeptide repeat domain 184 213 IPR002885 -
Cca01g02099 771 TIGRFAM PPR: pentatricopeptide repeat domain 84 117 IPR002885 -
Cca01g02099 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 337 IPR002885 -
Cca01g02099 771 SMART Ribosomal_S13_N_2 621 680 IPR012606 GO:0003735|GO:0005840|GO:0006412
Cca01g02099 771 Gene3D Tetratricopeptide repeat domain 143 230 IPR011990 GO:0005515
Cca01g02099 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 229 601 - -
Cca01g02099 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 166 226 - -
Cca01g02099 771 Pfam Ribosomal S13/S15 N-terminal domain 621 680 IPR012606 GO:0003735|GO:0005840|GO:0006412
Cca01g02099 771 Pfam E motif 526 588 IPR046848 -
Cca01g02099 771 Pfam Ribosomal protein S15 694 763 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca01g02099 771 Hamap 30S ribosomal protein S15 [rpsO]. 623 769 IPR023029 -
Cca01g02099 771 Pfam PPR repeat family 306 355 IPR002885 -
Cca01g02099 771 Pfam PPR repeat family 181 214 IPR002885 -
Cca01g02099 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Cca01g02099 771 ProSitePatterns Ribosomal protein S15 signature. 718 748 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca01g02099 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Cca01g02099 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 163 - -
Cca01g02099 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 229 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02099 Cca-Chr1 48330975 48338589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02099 621 771 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 94.040 1.17e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02099 - - ccaj:109819180 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02099 01 48330975 48338589 Cca01g02099 01 48330975 48338589 ECH