Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02098 ATGGGAAACTCAAGTTGCAGTTTACAATTAGTAACTATTATCTTTAGTACCTACTTTTATATCTTTTTCCTAGAAGGTGTTATTGCTAACACTATGGAAGCTTCTAATTCCTCATCCACAAATGAGGAACAAGAGGCTTTGCTCCAGAGCAAATGGGGGGAAGGCCGAAATATCTCAGAACATTGTAAATGGAATGGTATTGTGTGCAATGAAGCTCATAGAATTACAGAGATTTCAACTAGGAAATATTTTTATATTCCTCCAACAGAAGCTCATATTCAGAATTTCAATGTGACTGCATTCCCTAATTTAATCCGTTTAGAGCTTAGTGGGTTGGGACTCAAAGGAAGCATCCCTTCTGAAATAGGATCTCTTAAAAATCTTATGCACCTTGACCTGTCCTCTAATTGTCTTCAAGGTGAGTTGCCTAGTTCACTTTCAAGTCTCACACAGCTCGAGACACTTAATATTTCTAAGAATTTTCTTACTGGTCTGATCCCTCCAATTTTGGAGCACTTGATCCTTCTCAAAGTTTTAGATCTTTCTCATAATCAGATTATTGGTGTTATACCAAAGGGGATTTCTGACCTTACACAACTAACAAGGGTTCAACTATCTTGGAATCAAATAACTGGTTTCATTCCATCTGGGCTTGGACAAATAAGACTTGGAATTTTAGATATTTCCAACAATAAGCTTGAGGGACCTATCCCCTATGGTGTCTTGAACCATTGTAGTTATATTCAGTTAAGCAACAACTCTTTAAGTGGAAGCATTCCTCCTCAAATAGGAAATATTTCATATCTTGATCTTAGTTATAATGACCTCTCAGGTAACATACCTGAGGGACTCCATTCTGTGCCTCACCTTAATTTGTCCTACAATTCCTTTAACGATTCAGATCACAGTTTTTGTGGTTTTCCAAAAGACTCATTAATTGGTAATAAGGATTTCAATTATTCATGCTCTTCTGATGCTGATATTTCTCTAGTGATGATAATTGCCTTTTCTACCTTCAATGGCATGGTCTTTTCAATAGTCCTTGTGTGTTGGGGAATTCATGTTTTTTGTCCCACTCACGATGAGTTTGGAAATGAGGAAAGAAAGAATGGAGACATGCTTTCAATTTGGAACTATGATGGAAAAATTGCATTTGAAGACATAATTAAAGCCACGGATGACTTTGATATCCGGTATTGCATAGGAACAGGAGCTTATGGAAGTGTATATAAAGCACAACTTCCCAGTGGTAGAGTTGTTGCACTGAAAAAGCTTCACAAAACAGAATCTGAAAATCCATCCTTTTACAAGAGTTTCTCTAATGAGGCCAAGATCTTGACAGAAATTCGCCACCGTAACATCATTAGGCTTTATGGTTTTTGTTTGCATAACAAGTGTATGTTTTTGGTGTATGAGTATATGGAAAGGGGAAGCTTATTTTATAACTTGTTTAATGAAGTGGAAGCTCAAGAGTTGAATTGGAGCAAGAGGATAAATATCGTAAAAGAGATAGCCTATGCCTTGGCTCACATGCATCATGATTGTACTCCACCTATTGTTCATAGAGACATAAGCAGTAACAATATTTTGTTGAACATGGAGCTACAGGCTTTCATCTCAGACTTTGGCACAGCAAGACTTCTTGATTGCCATTCATCAAATCAAACTCTTCTTGCTGGTACTTACGGATATGTTGCTCCAGAATTGGCTAGCACCTTGACTGTGACTACAAAATGTGATGTGTATAGCTTTGGAGTGGTGGTTTTGGAAACAATGATGGGTAGACATCCAGCTGAATTGATTTCTTCTTTGCCAGAACCATCCATTCAAAACAAGAAGCTGAAAAATATATTGGACTCACGAATTCCACTACCATTTTTTCGAAAAGACATGCAAGATATTGTCCTTGTTGTAACATTAGCGTTGGCATGCTTGTGCCCCCACCCAAAATCCAGACCATCAATGCAGGAAATAGCTAATGAGCTTTTAGTTTCCAAGCCACCAATGCTTTGGCATTTTGATGGCATTTCCATCCATCAACTGATGAAGCAAAAGATATATATAATTGGCAGAAGTTAG 2079 0.3747 MGNSSCSLQLVTIIFSTYFYIFFLEGVIANTMEASNSSSTNEEQEALLQSKWGEGRNISEHCKWNGIVCNEAHRITEISTRKYFYIPPTEAHIQNFNVTAFPNLIRLELSGLGLKGSIPSEIGSLKNLMHLDLSSNCLQGELPSSLSSLTQLETLNISKNFLTGLIPPILEHLILLKVLDLSHNQIIGVIPKGISDLTQLTRVQLSWNQITGFIPSGLGQIRLGILDISNNKLEGPIPYGVLNHCSYIQLSNNSLSGSIPPQIGNISYLDLSYNDLSGNIPEGLHSVPHLNLSYNSFNDSDHSFCGFPKDSLIGNKDFNYSCSSDADISLVMIIAFSTFNGMVFSIVLVCWGIHVFCPTHDEFGNEERKNGDMLSIWNYDGKIAFEDIIKATDDFDIRYCIGTGAYGSVYKAQLPSGRVVALKKLHKTESENPSFYKSFSNEAKILTEIRHRNIIRLYGFCLHNKCMFLVYEYMERGSLFYNLFNEVEAQELNWSKRINIVKEIAYALAHMHHDCTPPIVHRDISSNNILLNMELQAFISDFGTARLLDCHSSNQTLLAGTYGYVAPELASTLTVTTKCDVYSFGVVVLETMMGRHPAELISSLPEPSIQNKKLKNILDSRIPLPFFRKDMQDIVLVVTLALACLCPHPKSRPSMQEIANELLVSKPPMLWHFDGISIHQLMKQKIYIIGRS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02098 692 SUPERFAMILY Protein kinase-like (PK-like) 378 663 IPR011009 -
Cca01g02098 692 Pfam Protein kinase domain 400 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02098 692 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Cca01g02098 692 Pfam Leucine rich repeat 151 210 IPR001611 GO:0005515
Cca01g02098 692 SUPERFAMILY L domain-like 62 309 - -
Cca01g02098 692 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 38 298 - -
Cca01g02098 692 Gene3D Ribonuclease Inhibitor 33 324 IPR032675 -
Cca01g02098 692 ProSitePatterns Tyrosine protein kinases specific active-site signature. 519 531 IPR008266 GO:0004672|GO:0006468
Cca01g02098 692 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Cca01g02098 692 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 223 681 - -
Cca01g02098 692 ProSiteProfiles Protein kinase domain profile. 395 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02098 692 Gene3D Phosphorylase Kinase; domain 1 361 473 - -
Cca01g02098 692 Gene3D Transferase(Phosphotransferase) domain 1 474 667 - -
Cca01g02098 692 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 38 298 - -
Cca01g02098 692 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 223 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02098 Cca-Chr1 48325191 48327922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02098 104 567 Receptor kinase-like Gene Family AT4G08850 41.955 7.06e-106 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca01g02098 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02098 - - vra:106773464 1098.96