Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02082 ATGACTTACATTGAGTCCTCTTGTAATGGTACCCTCTATCCCGATCTTTGTATTCGTTGCCTGACCCAATATGTCAAATCCAACATAAATGGGCCACAACACTTGGCGCAATATGCTTTATCAATGAGTCTCTCTAGAGCACTTCACACAAGAAAGTATCTTCTGAAAGTGACCAAAGAACTTAAGACTAAAGCCGTCAAGAGCAATAAAAGAGAGTACCTAATTGTTCAAGATTGTGTGAACCAAATTACTCATAGTGTAGACCAACTTAGCCAAGTTATGAAAGAACTACGCAGGTTGAACAAACGTGGGTCCACCATCAATGATGACACGTTGTGGCACATAAGTAATGTAGAGACATGGGTAAGCACTGCATTAACAGATGCTAGTAGTTGTGTGTACTCATTTCCTGGTCATAGGATGAGTAAAAGAACAAGTACTATTAAGGTTAAGGCTATGAATGTAGCTGAAGTTACTAGTAATGCATTATTCTTATTTCAAAAATATGCATCTAGGTATCGAAAAGTTGCAACCATAACCACCAAGAAGTCCTAG 555 0.3856 MTYIESSCNGTLYPDLCIRCLTQYVKSNINGPQHLAQYALSMSLSRALHTRKYLLKVTKELKTKAVKSNKREYLIVQDCVNQITHSVDQLSQVMKELRRLNKRGSTINDDTLWHISNVETWVSTALTDASSCVYSFPGHRMSKRTSTIKVKAMNVAEVTSNALFLFQKYASRYRKVATITTKKS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02082 184 PANTHER PECTINESTERASE INHIBITOR-LIKE 2 173 - -
Cca01g02082 184 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 169 IPR035513 -
Cca01g02082 184 CDD PMEI-like_3 6 171 - -
Cca01g02082 184 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 169 IPR035513 -
Cca01g02082 184 SMART PMEI_2 1 165 IPR006501 GO:0004857
Cca01g02082 184 PANTHER BNAANNG18590D PROTEIN 2 173 - -
Cca01g02082 184 Pfam Plant invertase/pectin methylesterase inhibitor 3 163 IPR006501 GO:0004857
Cca01g02082 184 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 169 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02082 Cca-Chr1 48156755 48157309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02082 4 167 Carbohydrate Esterase AT3G14310 23.810 2.53e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02082 - - gmx:100785555 296.975