Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02081 ATGGCACAACTCAACCTCACATTAGTCATTTTCCTCTCTCTCCTCTTTTCAATTCTTGCCACCCCAGTTGAGCCATCAACATTGACAAGGCACAAAAATTCCCAAACAATGACCTATATAGAGTCCTCTTGCAATGGCACCCTCTATCCTAATCTTTGCATCCGTTGTTTGGCTCAATATGTCAAATCCACCATAAATAGTCCACAACACTTAGCCCAATATGCATTGTCGGTGAGTCTCTCTAGAGCATTACACACAAGAGTGTACCTTTTGAAAGTGGCCAAAGAACTTAAAGCCATCAAAAATAGCAAAAGAGAGTATCAAATTGTTCAAGATTGTGTGAATCAAATCACTGATAGTGTGAACCAAATTAGTCAAGCTATGAAAGAATTACGTAAGTTGAACAAACGTGAGTCCACCATCGATGATAATATGTTGTGGCACATAAGCAACGTTGAGACATGGGTGAGTACTGCCTTAACAGATGCTAGTAGTTGTGTATACTCATTTCCTGGAAATAGGATGAGTAAGAGAGCAGCTGCTATTAAGGTCAAGGCCATGGATGTGGCGGAACATACTAGTAATGCATTGTTCTTGTTTCATAAATATGCATCTAGGTATCAGAAAGCAGCAACTAGAACCACCAAGAAGCCCTAG 657 0.4018 MAQLNLTLVIFLSLLFSILATPVEPSTLTRHKNSQTMTYIESSCNGTLYPNLCIRCLAQYVKSTINSPQHLAQYALSVSLSRALHTRVYLLKVAKELKAIKNSKREYQIVQDCVNQITDSVNQISQAMKELRKLNKRESTIDDNMLWHISNVETWVSTALTDASSCVYSFPGNRMSKRAAAIKVKAMDVAEHTSNALFLFHKYASRYQKAATRTTKKP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02081 218 CDD PMEI-like_3 42 205 - -
Cca01g02081 218 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 203 IPR006501 GO:0004857
Cca01g02081 218 SMART PMEI_2 35 199 IPR006501 GO:0004857
Cca01g02081 218 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 203 IPR035513 -
Cca01g02081 218 PANTHER PECTINESTERASE INHIBITOR-LIKE 5 206 - -
Cca01g02081 218 Pfam Plant invertase/pectin methylesterase inhibitor 39 197 IPR006501 GO:0004857
Cca01g02081 218 PANTHER BNAANNG18590D PROTEIN 5 206 - -
Cca01g02081 218 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 203 IPR035513 -
Cca01g02081 218 Coils Coil 114 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02081 Cca-Chr1 48151964 48152754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02081 40 197 Carbohydrate Esterase AT1G53830 23.270 9.12e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02081 - - gmx:100791798 349.747