Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02079 ATGGCCACATATTATGCCACCACCACCACCTTGTTCCTCCTCCTTGCCGTGGCCACAACCACCCTTTGCCTCCAAGAAGTGGAGGTGCTCCAAATGGCCCAAAACCATGTTTCTAAGGCCAAAAACTGGGTTGGCAACTCTTTGAGACTGTATGACTTGGAAAGCCAAACTCTTACTTCTGATCAAACAAGGGCTATAGCCCTTAGAGATTGTGAGAAACTCTATGAAGAAAGTGAGTCTAGGCTCTCTCACATGATGTCTGAAGAGAGCAGTTACTCTAAAGAAGATGCACTCACATGGGTAAGTGCTGTCATGACAAATCATAGGACTTGTTTGGATGGATTGCAGGAAAAAGGATATGTTGAAGCTCAGGTTTTGGACAGAAACCTGACCATGTTGCTTAAGCAAGCTCTTGTTTTGTATTCAAAGACTAAAGGCAAAGTTGGCAAAGGACCACCTGAGGGAACAATATCCAAATCAGATGTTGGTGATTTAGAATCATGGAGTCCAACAAACTATAATCCAGACTTCACAGTGGCACAGGATGGTTCAGGGACCCACAGAACAATCCAAGCAGCAGTGAGTGCACTAGCTTCAATGGGCCACAACCGTCCTGCGAGAGCAGTCATACATGTAAAATCAGGGATCTATAATGAGAAAGTGGAAATTGGAGAGAAACTGCGCAATGTTATGTTTGTAGGAGATGGCATAGACAAAACAATTGTCACTGGCAACAGAAATGTTGCTCAAGGTTCTTCCACTATGGGTTCAGCCACATTTGATGTATCAGGGGATGGATTTTGGGCGAGAGACATGACTTTTGAGAACACAGCAGGCCCAGAAAAGCACCAAGCAGTGGCACTCAAAGTAAGTTCAGACTTATCAGTCTTCTACAGGTGCAGTTTCAAATCCTACCAAGACACTCTCTATGTGCATTCAAACCGCCAATTCTACCGAGACTGTCACATATATGGTACCATAGACTTCATCTTTGGTGATGCCACAGTGGTGCTACAAAACTGTGACATCTTTGTGAGGAAGCCAATGAGCCACCAAACCAACTTCATCACAGCACAAGGGAGAGATGACCCTCACAAAAACACTGGCATCTCAATCCAGAGTTGTAGGGTTAGGCCTGCATCTGAGTTTGCCACACTCAAGGACTCTCATAGCACCTTCCTGGGGAGGCCTTGGAAGAAGTATTCTAGGACTGTGTTTCTCAAGACTGATTTGGATGGAATGGTGCACCCTAGAGGGTGGGGTGAGTGGAGTGGAAACTTTGCACTGTCAACTTTGTACTATGGTGAGTATATGAACACAGGAAGTGGTGCATCTACACAGAATAGGGTTAATTGGCCTGGTTTTCATGTGCTGAGGAGTGCTAGTGAGGCATCACCCTTCACAGTGACTCAGTTTCTGCAAGGTGAAAGGTGGATTCCAGCTACAGGGGTGCCTTTCTGGTCTGGAATTTGA 1473 0.4555 MATYYATTTTLFLLLAVATTTLCLQEVEVLQMAQNHVSKAKNWVGNSLRLYDLESQTLTSDQTRAIALRDCEKLYEESESRLSHMMSEESSYSKEDALTWVSAVMTNHRTCLDGLQEKGYVEAQVLDRNLTMLLKQALVLYSKTKGKVGKGPPEGTISKSDVGDLESWSPTNYNPDFTVAQDGSGTHRTIQAAVSALASMGHNRPARAVIHVKSGIYNEKVEIGEKLRNVMFVGDGIDKTIVTGNRNVAQGSSTMGSATFDVSGDGFWARDMTFENTAGPEKHQAVALKVSSDLSVFYRCSFKSYQDTLYVHSNRQFYRDCHIYGTIDFIFGDATVVLQNCDIFVRKPMSHQTNFITAQGRDDPHKNTGISIQSCRVRPASEFATLKDSHSTFLGRPWKKYSRTVFLKTDLDGMVHPRGWGEWSGNFALSTLYYGEYMNTGSGASTQNRVNWPGFHVLRSASEASPFTVTQFLQGERWIPATGVPFWSGI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02079 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 144 IPR035513 -
Cca01g02079 490 PANTHER PECTINESTERASE 7 489 - -
Cca01g02079 490 CDD PMEI-like_4 27 143 - -
Cca01g02079 490 Gene3D - 170 490 IPR012334 -
Cca01g02079 490 ProSitePatterns Pectinesterase signature 2. 323 332 IPR033131 -
Cca01g02079 490 Pfam Pectinesterase 176 476 IPR000070 GO:0030599|GO:0042545
Cca01g02079 490 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 139 IPR006501 GO:0004857
Cca01g02079 490 SMART PMEI_2 8 140 IPR006501 GO:0004857
Cca01g02079 490 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 7 489 - -
Cca01g02079 490 Pfam Plant invertase/pectin methylesterase inhibitor 31 138 IPR006501 GO:0004857
Cca01g02079 490 SUPERFAMILY Pectin lyase-like 173 489 IPR011050 -
Cca01g02079 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 132 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02079 Cca-Chr1 48117111 48120221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02079 8 490 Carbohydrate Esterase AT3G60730 55.186 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02079 K01051 - gmx:100792852 833.943