Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02078 ATGACATTTTTCCGTTTGTTGATCCTAACACTATTACTTCCTTTCCTATACTCCACTTTTGTTTCAAGCTATTCTTTGAATGATGTTAAACTTTGGTGCAGCCAAACCCCAAACCCTCAACCATGTGAGTATTTCTTGACCAATAACCCCACTCAACAATTCAAACCCATCAACCATAAATCTGATTTCCTCAAACTTTCATTGCTACTTGCTCAAGAGAGAGCACTGAAAGGCCATGCAAACACTCTATCACTTGGCTCAAAATGTCGTAACCCTCGTGAAACAGCTGCATGGGCTGATTGTGTTGAGCTTTACGAACAAACCATCCATAAACTCAACAAAACCCTAGACCCTAACACCAAGTGCTCCCAAGTTGATACCCAAACATGGCTCAGCACAGCTCTCACCAACCTTGAGACATGCAAAGCTGGGTTCTATGAGCTTGGGGTTCAAGACTATGTGCTACCTCTTATGTCCAACAATGTTACTAAGTTGTTGAGCAACACCTTGGCACTTAACAAAGTTGAGTATCAAGAACCAAGTTACAAAGATGGGTTCCCAACATGGGTGAAGCCAGGTGATAGAAAGTTGTTGCAAGCTTCTTCTCCAGCTTCTAGGGCTAATGTAGTGGTGGCAAAAGATGGGTCTGGAAAGTACACAACGGTGAGTGCAGCCATAACTGCAGCACCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGCTGGTGTATACAATGAACAAGTTGAGATAAATGCAAATAACATAATGTTGGTTGGAGATGGTATTGGAAAGACCATAATCACAGGTAGCAAAAGCGTTGGAGGAGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGTTGTTGGAGATGGGTTTATAGCACAAGACATCACATTTAGAAACACTGCTGGTGCAGCAAACCATCAAGCCGTTGCATTGCGTTCAGGATCAGACTTATCAGTGTTTTATAGATGTAGCTTTGAAGGTTACCAAGACACACTTTATGTGTATTCGGATAGACAATTCTACAGAGAATGTGACATATATGGCACTGTTGACTTCATCTTTGGCAATGCTGCTGTGGTGTTCCAAAGTTGTAACCTATATGCAAGGAACCCTCCAAACAAAGTTAACACAATCACTGCTCAAGGAAGAACCGATCCAAACCAGAACACTGGCATTTCCATTCACAATTCAAAGGTTACTGCAGCCTCTGACTTGAAGGGAGTTGAGAGCTCAGTGAAGACGTACCTTGGAAGGCCATGGCAAGAATATTCTAGAACAGTTTTCATGAAGACTTATCTCGATAGTTTGATTGATCCAGCGGGTTGGATGGAATGGAGTGGTAACTTTGCATTAAACACATTGTACTATGGAGAATACATGAACACAGGAGCAGGTTCCTCAACTTCAAACCGAGTTAAATGGTCAGGTTATCATGTCATTACAAGTGCTTCTGAAGCCTCAAAATTCACCGTTGCAAATTTCATTGCTGGAAACTCCTGGTTGCCCTCCACTGGCGTGCCTTTCACCTCAACTCTTTAA 1551 0.4262 MTFFRLLILTLLLPFLYSTFVSSYSLNDVKLWCSQTPNPQPCEYFLTNNPTQQFKPINHKSDFLKLSLLLAQERALKGHANTLSLGSKCRNPRETAAWADCVELYEQTIHKLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVEYQEPSYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTVSAAITAAPKSSSGRYVIYVKAGVYNEQVEINANNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVFQSCNLYARNPPNKVNTITAQGRTDPNQNTGISIHNSKVTAASDLKGVESSVKTYLGRPWQEYSRTVFMKTYLDSLIDPAGWMEWSGNFALNTLYYGEYMNTGAGSSTSNRVKWSGYHVITSASEASKFTVANFIAGNSWLPSTGVPFTSTL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02078 516 PANTHER PECTINESTERASE 6 515 - -
Cca01g02078 516 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Cca01g02078 516 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Cca01g02078 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Cca01g02078 516 Pfam Plant invertase/pectin methylesterase inhibitor 29 172 IPR006501 GO:0004857
Cca01g02078 516 CDD PMEI-like_3 31 174 - -
Cca01g02078 516 SMART PMEI_2 24 172 IPR006501 GO:0004857
Cca01g02078 516 Gene3D - 203 516 IPR012334 -
Cca01g02078 516 PANTHER PECTINESTERASE 6 515 - -
Cca01g02078 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 175 IPR035513 -
Cca01g02078 516 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Cca01g02078 516 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
Cca01g02078 516 SUPERFAMILY Pectin lyase-like 202 515 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02078 Cca-Chr1 48103274 48104960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02078 1 516 Carbohydrate Esterase AT2G45220 67.892 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02078 K01051 - gmx:100781697 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02078 01 48103274 48104960 Cca01g02078 01 48103274 48104960 ECH