Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02077 ATGAATGCTTTTCACTTGCTTCTGACACTATTTATTCCTTTCCTATTCTCCACTTTTGTTTCTGGTTATTCTTGGAATGACGTTAAGCTTTGGTGCAACCAAACCCCAAACCCTCAACCATGTGAGTATTTCTTGACCAATAACCCCACTTACCAATACAAACCCATTAAGCAAAAATCTGATTTTCTCCAACTTTCATTGCAACTTGCTCAAGAGAGAGCACTCAAGGGCCATGCAAAAACTCTTTCACATGGTTCAAAGTGCCGAAACCCTCGTGAAAGGCTTGCTTGGGCTGATTGTGTTGAGCTTTACGAGCAAACTATCCAAAAACTGAACGAAACCTTAAACCCTAACACCAAGTGCTCCCAAGTTGATGCCCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCTGGGTTCTACGAGCTTGGGGTTCAAGACTATTTGCTACCTCTTATGTCCAACAATGTTACTAAGTTGTTGAGCAACACCTTGGCACTTAACAAAGTTCAATATCAAGAACAAGGTTACAAAGATGGTTTCCCAACATGGGTGAAGCCAGGTGATAGAAAGTTGTTGCAAGCTTCTTCTCCAGCTTCTAGGGCTAATGCTGTGGTGGCAAAAGATGGGTCTGCAAAGTACACAACGGTGAGTGCAGCCGTAAATGCAGCACCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGCTGGTGTATACAATGAACAAGTTGAGATAAAAGCAAAGAATATAATGTTGATTGGAGATGGTATTGGAAAGACCATAATCACAGGTAGTAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGTCGTTGGGGATGGATTTATTGGTCAAGGTATCACATTTAGGAACACCGCTGGTGCAAAAAACCACCAAGCAGTTGCATTGCGTTCTGGATCAGACTTGTCAGTATTTTACAAATGCAGTTTTGAAGGTTACCAAGACACGCTATATGTCCACTCTGACAGACAATTCTATAGGGAATGTAACATCTATGGCACAGTTGACTTCATATTTGGCAATGCTGCTGTTGTGTTCCAAAACTGTAACATATTTGCAAGAAACCCTCCCAACAAAGTCAACACCATCACTGCTCAAGGAAGAACCGATCCAAACCAAAACACTGGCATTTCCATTCACAATTCTAGGGTTACTGCTGCCTCGGATTTGAAACCAGTTCAAAACTCAGTTAAGACTTATCTTGGAAGGCCTTGGAAGCAATATTCTAGAACAGTTTTCATGAAGACTTATCTTGATGGTTTGATCAATCCAACGGGTTGGTTAGAATGGAATGGTAACTTTGCATTAAGAACTTTGTACTATGGAGAATACATGAACACTGGACCAGGGTCTTCTACTGCTAGAAGAGTTAACTGGCCTGGTTATCGTGTGATAACTAGAGCTTCAGAAGCATCAAAATTCACTGTTGGAAATTTCATCGCAGGAAACGCATGGTTACCTGCCACCAAAGTGCCTTTTACCCCAACTCTGTAA 1548 0.4205 MNAFHLLLTLFIPFLFSTFVSGYSWNDVKLWCNQTPNPQPCEYFLTNNPTYQYKPIKQKSDFLQLSLQLAQERALKGHAKTLSHGSKCRNPRERLAWADCVELYEQTIQKLNETLNPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYLLPLMSNNVTKLLSNTLALNKVQYQEQGYKDGFPTWVKPGDRKLLQASSPASRANAVVAKDGSAKYTTVSAAVNAAPKSSSGRYVIYVKAGVYNEQVEIKAKNIMLIGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIGQGITFRNTAGAKNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSDRQFYRECNIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQNSVKTYLGRPWKQYSRTVFMKTYLDGLINPTGWLEWNGNFALRTLYYGEYMNTGPGSSTARRVNWPGYRVITRASEASKFTVGNFIAGNAWLPATKVPFTPTL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02077 515 SUPERFAMILY Pectin lyase-like 201 514 IPR011050 -
Cca01g02077 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 173 IPR006501 GO:0004857
Cca01g02077 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Cca01g02077 515 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Cca01g02077 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Cca01g02077 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Cca01g02077 515 CDD PMEI-like_3 30 173 - -
Cca01g02077 515 PANTHER PECTINESTERASE 6 512 - -
Cca01g02077 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
Cca01g02077 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Cca01g02077 515 PANTHER PECTINESTERASE 6 512 - -
Cca01g02077 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Cca01g02077 515 SMART complete 240 418 IPR006633 -
Cca01g02077 515 Gene3D - 202 515 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02077 Cca-Chr1 48095943 48097985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02077 1 515 Carbohydrate Esterase AT2G45220 67.954 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02077 K01051 - gmx:100783964 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02077 01 48095943 48097985 Cca01g02077 01 48095943 48097985 ECH