Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02076 ATGGCATCATTTAGGTCACTATTAACCCTTCTACTTGCCCCCTTTCTTTTTTCTTCCATTGCTTCCTCTTACTCATTGAAAGACATCCAATCATGGTGCAACCAAACCCCTTACCCTCAGCCATGTGAGTACTACTTGACCAACCATGCCTTCAACAAACCCATCAAAAACAAATCCGATTTCCTCAAAGTCTCCCTCCAACTAGCTCTAGAGAGAGCACAAAACGGTGAACAGAACACAAATTCAATAGGCCCCAAGTGCCGCAACGTGCATGAAAAATCTGCATGGGAAGATTGCCTTGAACTCTACGAATACACCATCCAAAAGCTCAACAAAACCGTTGACCCTTACACCAAGTGCACCCAAACCGACACACAAACATGGCTCAGCACTGCCCTAACAAACCTTGAAACATGCAAAGCTGGATTCTATGAACTTGGGGTCCCAGATTATATACTACCCTTGATGTCAAATAATGTCACAAAGTTACTTAGTAACACCCTCTCTCTCAACAAGGGTTCTTACCAATCTCAACCACCAAGTTACAAAGATGGTTTCCCAACATGGGTGAAGCCAGGTGATAGAAAGTTGTTGCAATCATCTTCAGCAGCTTCTAAGGCCAATGTGGTGGTGGCTAAAGATGGCTCTGGCAAGTACACAACGGTGAAAGCAGCCGTTGATGCTGCTCCAACGAGTAGTAGTGGAAGGTATGTGATATATGTGAAGGCTGGCGTATACAATGAACAAGTTGAGGTAAAAGCAAAGAATATAATGTTGGTTGGAGATGGTATTGGAAAGACCATAATCACAGGTAGTAAAAGTGTTGGAGGAGGCTCCACAACTTTCCGTTCTGCCACTGTTGCTGCTGTGGGTGATGGATTCATTGCACAAGATATCACATTCAGGAACACAGCAGGAGCAGCAAATCACCAAGCTGTGGCATTCCGTTCAGGCTCTGATCTCTCAGTGTTCTACAAATGCAGCTTTGAGGGTTACCAAGACACACTCTATGTCCACTCAGAGAGGCAATTCTACAGAGAATGTGACATCTATGGCACAGTGGATTTCATCTTTGGAAATGCAGCAGTAGTCTTGCAAAACTGCAACATCTATGCAAGAAGCCCTCCACAGAAAACCATCACAGTCACAGCACAAGGCAGAACTGACCCTAACCAAAACACAGGCATCATCATTCACAACTCCAAGGTCACAGGTGCCTCTGGCTTTAACCCTAGTTCGGTTAAATCATACCTTGGGAGGCCCTGGCAAAAGTACTCAAGGACAGTGTTCATGAAGACCTACCTGGACAGCTTGATCAACCCTGCTGGTTGGATGGAATGGGATGGTAACTTTGCTTTGGACACTTTGTACTATGCAGAATATGCAAACACTGGTCCTGGCTCCAGCACTGCAAATAGGGTTTCATGGAAGGGTTACCATGTCCTCACTAGTGCCTCTCAGGCCTCACCTTTCACTGTTGGAAACTTCATTGCTGGAAACTCTTGGATACCTAGCACTGGTGTCCCTTTCACCTCTGGACTTTAA 1545 0.4531 MASFRSLLTLLLAPFLFSSIASSYSLKDIQSWCNQTPYPQPCEYYLTNHAFNKPIKNKSDFLKVSLQLALERAQNGEQNTNSIGPKCRNVHEKSAWEDCLELYEYTIQKLNKTVDPYTKCTQTDTQTWLSTALTNLETCKAGFYELGVPDYILPLMSNNVTKLLSNTLSLNKGSYQSQPPSYKDGFPTWVKPGDRKLLQSSSAASKANVVVAKDGSGKYTTVKAAVDAAPTSSSGRYVIYVKAGVYNEQVEVKAKNIMLVGDGIGKTIITGSKSVGGGSTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYARSPPQKTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWQKYSRTVFMKTYLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSSTANRVSWKGYHVLTSASQASPFTVGNFIAGNSWIPSTGVPFTSGL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02076 514 PANTHER PECTINESTERASE 6 513 - -
Cca01g02076 514 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Cca01g02076 514 Pfam Plant invertase/pectin methylesterase inhibitor 28 170 IPR006501 GO:0004857
Cca01g02076 514 Gene3D - 202 514 IPR012334 -
Cca01g02076 514 Pfam Pectinesterase 208 500 IPR000070 GO:0030599|GO:0042545
Cca01g02076 514 CDD PMEI-like_3 31 172 - -
Cca01g02076 514 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 172 IPR006501 GO:0004857
Cca01g02076 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 173 IPR035513 -
Cca01g02076 514 SMART PMEI_2 24 170 IPR006501 GO:0004857
Cca01g02076 514 SUPERFAMILY Pectin lyase-like 202 513 IPR011050 -
Cca01g02076 514 PANTHER PECTINESTERASE 6 513 - -
Cca01g02076 514 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Cca01g02076 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 172 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02076 Cca-Chr1 48070018 48074858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02076 1 514 Carbohydrate Esterase AT2G45220 67.311 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02076 K01051 - gmx:100794948 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02076 01 48070018 48074858 Cca01g02076 01 48070018 48074858 ECH