Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02074 ATGCAATTCAGGCTCGGCAGGCGCGTGATTCGGGTCACGAGATGGATCTTCCGTCGGCCCAGGGCCCGGCCCAGATACTACTACGCGCGTCTGGGTGGCGGCCCATCATCTTCGGGGAATCCTATGACGAAGCTTCTCACGTGGGGACGAAATCTGAGGACACGAGCGAGGTCCTTATGCCGGAAGAAAACCGGGTCGAGTTACCTACCGATCGGGTCGGATCTGGAAAAGGCTCCGCCGGTGCCGAAGGGTCACTTGGCGGTGTACGTCGGAGAGGAGGACGGCGAGTTCCGGCGGGTTCTGGTGCCGGTGATTTACTTCAACCACCCTCTGTTCAGTGAGTTGCTGAAAGAGACGGAGAAGGAGTTCGGGTTCGAGCACCCGGGTGGGATCACGATTCCGTGTCAACTCACTGAGTTTGAGCGGGTCAAGGAGCGGGTTGCATCCGGGTCGGGTTTGCGCGGCAGAATCCGAAGACTCACGTGA 486 0.5988 MQFRLGRRVIRVTRWIFRRPRARPRYYYARLGGGPSSSGNPMTKLLTWGRNLRTRARSLCRKKTGSSYLPIGSDLEKAPPVPKGHLAVYVGEEDGEFRRVLVPVIYFNHPLFSELLKETEKEFGFEHPGGITIPCQLTEFERVKERVASGSGLRGRIRRLT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02074 161 Pfam Auxin responsive protein 68 144 IPR003676 GO:0009733
Cca01g02074 161 PANTHER SMALL AUXIN-UP RNA-RELATED 3 156 - -
Cca01g02074 161 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 156 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02074 Cca-Chr1 48051148 48052388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02074 76 140 Calmodulin-binding Proteins AT3G43120 49.231 1.54e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02074 K14488 - gmx:100808164 212.231