Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02072 ATGTCATCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTTCATTGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACTGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGTCAACATGCGTGGACTGCTTCTTCCTGCTACCAATCAGCTTCACCTTGGCCACTCCTTCTTCACTCCTCAAAATCTTCTGGAGGAGATTCGAAATGCACCTTCAACAAACATGATGATGAACCAGCTGCCAAACCCTAATAATTTGGTCATGAGCACCATGAGAGGAGGGCCTGAAGAAACCCCTAAGCCTCCATCAGCTAATAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCTTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGACGTGCTTATGAAAGATGGGTTTTTCGCACCCACTAATGTAGGCGTCTCTCCCTACTAG 648 0.4784 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPATNQLHLGHSFFTPQNLLEEIRNAPSTNMMMNQLPNPNNLVMSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLMKDGFFAPTNVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02072 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Cca01g02072 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Cca01g02072 215 PANTHER PROTEIN YABBY 6-RELATED 1 213 IPR006780 GO:0007275
Cca01g02072 215 SUPERFAMILY HMG-box 120 173 IPR036910 -
Cca01g02072 215 MobiDBLite consensus disorder prediction 110 133 - -
Cca01g02072 215 PANTHER PROTEIN YABBY 4 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02072 Cca-Chr1 47982857 47986441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02072 27 213 C2C2-YABBY Transcription Factor Family AT4G00180 63.636 6.09e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca01g02072 YABBY 6.3e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02072 K25796 - gmx:100781267 434.106