Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02064 ATGCGCACCGAAATCATCATCAGAGCCACTCGAACCCAAGCCGTTCTCGGGGAGAAGGGAAGGAGAATTAGGGAACTTACCTCCGTGGTTCAGAAGAGGTTCAAGTTTCCCGAGAACAGCGTTGAACTCTATGCCGAAAAAGTCAACAATAGGGGTCTTTGCGCTATTGCACAGGTTGAGTCTCTccccttggaattttacgattaa 207 0.4444 MRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQVESLPLEFYD 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02064 68 PANTHER 40S RIBOSOMAL S3-LIKE PROTEIN 1 63 - -
Cca01g02064 68 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 1 63 - -
Cca01g02064 68 Gene3D - 1 49 IPR015946 -
Cca01g02064 68 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 1 56 IPR009019 GO:0003723
Cca01g02064 68 Pfam KH domain 2 50 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02064 Cca-Chr1 47871887 47872187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02064 1 62 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 91.935 1.21e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02064 K02985 - gmx:100795045 119.398