Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02056 ATGAAGGCCATGCCCTTGCCTTTTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCAGATTCATTTTCAGTGCTTTTGCATCATCCACAACCAAAGTGGACCATAGACAAAGAGGATTATTGCTATGTGGGCAGCACTGAGCCCACCTCAGTTCTTGACTCCAGAAGAAGCCCTAGCCCCCCCACTTCCTCCTCCACAATGTCCTCTTCTCTTGGCAGCAACAGCACCAGCAAGGGTGGTGCTGGCAGTGGCACTTCAGccaccaccaccaccaccccagcccccacaccCTCTGAGAACCACCCTCCTCAGGAGCCCAGCCCTGATAAATGTGCCATCCGTATGGATGACTGGGAGGGCCAGGATCAGTCCATTCTCAGACTCATCATGGGAGATGTTGATGACCCTTCTGCTGGATTGAGCAAGCTCTTGCAAACCACTGCCTGTGGCTCTCAAGGTGTTGATTTCAATGCAGGCTTTGGTGTTGTGGATCAAGGCTTCaacatgaatatgaacatgaacatgaacatgaatatgaacatgGTTTCAGAATCTCTTGTTTTCACTGCTAACAATCCTCTTATGGTGTCATCCTCTGTGTCCCCTGGCGTGTTCACTTCTCAGCAGCAGCAGCAGGAGTTTGGAGTGGTGGATGAGAAGCCCCAGGTTATCAACCCCCACCAGTTTATGGTGAACCAGAACCAGGTTCAGTTTTCAGAAAACCCTTCTTTCTTTGTGCCATTGATGTACCCTCAAGTGCAAGAACAACAGGTTTTCCCTCAGCATCCGGCAAAACGCCCTATGTTTGACGCAATAGGGCACACCAATTATCAGGCTCCAAGGATGCCCCTTTTGGATTCAGGGCAAGAGGTGTTTGGTAGGAGGCAGCAAACACAGCTTCCATTGTTTCCTCACCATATGcagcaacagcaacagcaacagcaacagcagcagcaGCAACAACAACAGTCATTGGTTATGCCTTCTGCTAAACAGCAGAAGGTGAGTTCCGCCGGAGACGATGCAAGCCACCAGCTTCAGCAGGCCATATTTGATCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCTATTGGTAAGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGATGTCACTGCTTCATTCAAATGCTCACAACTTCATGGCCTTCTCGCCCATTACTTTCATATTCAAAATCGGAGCTTACAAGTCCTTTTCTGAGATATCACCTCTTCTCCAGTTTGCCAATTTTACTTCCAACCAAGCCCTCATCGAAGCTGTCGAGAGGTTTGACCGAATTCATGTTGTCGATTTCGATATCGGCTTTGGAGTGCAATGGTCATCTTTTATGCAAGAACTTGCCTTAAGAAGTAGTGGTGCACCTTCACTCAAACTCACTGCCATTGTGTCTCCCTCCACTTGTGATGAGGTTGAGCTCAATTTCACTAGAGAGAATTTGAACCAATATGCCAAAGACATCAACGTGTCTTTTGAGTTCAATGTTTTGAGCATTGAATCATTGAACTCTCCCTCTTGTCCACTGCTTGGTCAATTCTTTGATAACGAGGCAATCGCGGTGAACATGCCGGTTTCATGTTTCACAAACTATCCATCATTGTTCCCTTCGGTTCTCCACTTTGTGAAGCAGCTCAGGCCCAAGGTTGTGGTCACTTTGGACAGAAATTGTGATCGAATTGATGTACCACTTCCCACCAATGTAGTCCATGTTCTCCAATGCTATTCGGCCTTGCTCGAATCGCTGGATGCAGTGAATGTGAATCTTGATGTCCTCCAAAAGATTGAGAGGCATTTCATCCAACCAGCCATCAAAAAAATCGTACTTGGCCACCACCCTTCTCAAGAGAAATTACCCCCATGGAGGAACCTCTTCATACAATCCGGATTCTCCCCGTTTACATTTAGCAACTTCACAGAAGCTCAAGCCGAGTGTTTAGTTCAGAGGGCACCTGTAAGGGGATTTCACGTGGAGAGAAAACCTTCCTCACTTGTTCTATGCTGGCAGAGGAAAGAACTCATCTCGGTTTCTACTTGGAGATGCTGA 2130 0.4502 MKAMPLPFEEFQGKGVLDFSDSFSVLLHHPQPKWTIDKEDYCYVGSTEPTSVLDSRRSPSPPTSSSTMSSSLGSNSTSKGGAGSGTSATTTTTPAPTPSENHPPQEPSPDKCAIRMDDWEGQDQSILRLIMGDVDDPSAGLSKLLQTTACGSQGVDFNAGFGVVDQGFNMNMNMNMNMNMNMVSESLVFTANNPLMVSSSVSPGVFTSQQQQQEFGVVDEKPQVINPHQFMVNQNQVQFSENPSFFVPLMYPQVQEQQVFPQHPAKRPMFDAIGHTNYQAPRMPLLDSGQEVFGRRQQTQLPLFPHHMQQQQQQQQQQQQQQQQSLVMPSAKQQKVSSAGDDASHQLQQAIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHSNAHNFMAFSPITFIFKIGAYKSFSEISPLLQFANFTSNQALIEAVERFDRIHVVDFDIGFGVQWSSFMQELALRSSGAPSLKLTAIVSPSTCDEVELNFTRENLNQYAKDINVSFEFNVLSIESLNSPSCPLLGQFFDNEAIAVNMPVSCFTNYPSLFPSVLHFVKQLRPKVVVTLDRNCDRIDVPLPTNVVHVLQCYSALLESLDAVNVNLDVLQKIERHFIQPAIKKIVLGHHPSQEKLPPWRNLFIQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELISVSTWRC 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02056 709 MobiDBLite consensus disorder prediction 48 96 - -
Cca01g02056 709 MobiDBLite consensus disorder prediction 306 342 - -
Cca01g02056 709 MobiDBLite consensus disorder prediction 48 113 - -
Cca01g02056 709 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 708 IPR005202 -
Cca01g02056 709 ProSiteProfiles GRAS family profile. 342 708 IPR005202 -
Cca01g02056 709 Pfam GRAS domain family 353 708 IPR005202 -
Cca01g02056 709 PANTHER GRAS FAMILY TRANSCRIPTION REGULATOR 7 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02056 Cca-Chr1 47728111 47731324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02056 350 709 GRAS Transcription Factor Family AT4G00150 55.096 4.75e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca01g02056 GRAS 6.8e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02056 - - gmx:100801785 1138.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02056 01 47728111 47731324 Cca01g02056 01 47728111 47731324 ECH