Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02051 ATGGGAGAAGGAAGTAACCATCAAGCTATGACAGATGATGGGGATACTGAGCCTAGTGAAGGTGGAGTTAATAATGCTGAAAACTCTGGTTCTCATGTTGAAGTTGGGGTCTCtgagccatatgtgggtatggagtttgattctgaagatgctgcaaagactttctatagtgagtatgccaggcgagtgggtttcagcTACAAAGTTGGCCTGCATGGTCGTTCCAAAGCGGATGGGGCAAATATGTACCGGGAATTTATGTGTGGAAGGGCGGATTTGAAAAGAAAGCCTACTGAAAGTTGCAATGCAATGGTAAGGATCGAGCAGATGGGTCAAAATAAGTGGGTTGTTACAAAATTTGTAAAGGAGCATAGCCATTCCATGGAAAGCCTTAGTAAGTTGCATAACACTAGGCCAGGTAAGCACTTTTCTAGTGTTGGAAAAACCATGCCCGAAACTTACCAAGGAGTGGGGCTTGTTCCAACTGGTGTGATGTATGTCTCTATGGATAGGAATGCAATTCCCACTAAGAATATTCATGGGATGAGGAATATTCCTGCAGCTACTGCTGCTGCTGAAACAATTCACCCGGTTAAAACTCCTACATTGATGAATTATGCTGTTAGGCTACCTACtcgaaaaaggacattagggagggatgctcagaacctgctggaatacttaaagaaaatgcaagctgagaaccctggtgaacttgctggtgaatcacatgggcatgaatctttgacATCACGAGAAGGTGGAAAGAAGATTTCTTTCATGAAGAGAAGTGTTGCCAAAGTTCCCCTACCCAGTCATCCAGTCAGTGGGATTGCTTATGATGACAGAAAATCCCCCACTTCAACAACAGTTACAACCCCTCTTTTATGGCCATTACATGATGAAACGACAAACAGGTTTAATCTTAATGATGCTGGTACTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACAAATGACCCCCGTGTCTCTTCAGCGAGATGACGGTCCACCTGAAAACATGGTTGGTTATCCATGTCTGAAATCATTGACGTGGGTAATGGAGAAGAAGAACTCAACTCCAGGGAATCGAGTGGCTGCTATCAATCTTAAGTTGCAAGATTATAGCAGGATTCCGTCAACAGAATCAGTGGTTAAGTTTAATCTCTCAAAAGTTACCTTGGAACCATTGTTTAACCATATGGTCAACATCAGTGATCAGCTTTCCTCACCAACTAGGACTTTGGCCGTATTAAATCTCAAGGTGTGTGATTTTGTTCCATATAGATTTATCTTTCTCAAATAA 1308 0.3563 MGEGSNHQAMTDDGDTEPSEGGVNNAENSGSHVEVGVSEPYVGMEFDSEDAAKTFYSEYARRVGFSYKVGLHGRSKADGANMYREFMCGRADLKRKPTESCNAMVRIEQMGQNKWVVTKFVKEHSHSMESLSKLHNTRPGKHFSSVGKTMPETYQGVGLVPTGVMYVSMDRNAIPTKNIHGMRNIPAATAAAETIHPVKTPTLMNYAVRLPTRKRTLGRDAQNLLEYLKKMQAENPGELAGESHGHESLTSREGGKKISFMKRSVAKVPLPSHPVSGIAYDDRKSPTSTTVTTPLLWPLHDETTNRFNLNDAGTPVQSVADLNLPQMTPVSLQRDDGPPENMVGYPCLKSLTWVMEKKNSTPGNRVAAINLKLQDYSRIPSTESVVKFNLSKVTLEPLFNHMVNISDQLSSPTRTLAVLNLKVCDFVPYRFIFLK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02051 435 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 250 395 - -
Cca01g02051 435 MobiDBLite consensus disorder prediction 129 148 - -
Cca01g02051 435 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 237 IPR031052 GO:0006355
Cca01g02051 435 MobiDBLite consensus disorder prediction 132 148 - -
Cca01g02051 435 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 29 237 - -
Cca01g02051 435 Pfam FAR1 DNA-binding domain 54 128 IPR004330 -
Cca01g02051 435 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 250 395 IPR031052 GO:0006355
Cca01g02051 435 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02051 Cca-Chr1 47627838 47630684 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca01g02051 FAR1 1.3e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02051 - - gmx:100786206 381.719