Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02049 ATGTACCCAACAAACCTTCTTGAGATTTCATCCAAGAAATTGGAAGCATGCACCAACAATTTCAGTCAGAACAATCTCATTGGCTTGACACAGTTTGGTAGATGGTTTAGAGGCTACCTTGAAGGTCAACATGTATTAGTGAAGATATGGGACGGTGAAAGAATGGAACAGATAAGTTCCAAATATAATGATGAGTATTTGATTTTCAAAGCAATCAAATTTTGGACAAATCCAACATTGAAAGGTTACCCCAATTTGGTGACGTTGATCGGTTATACTTTGGAGAGAGATGTAAAGGGACTTGTGTATGATCTCAATCCACTTGATACTTTGGATAACTTGATAATGAAAGATAAGCTGAATTGGCTTCAGAGAATCAATGTAATTCATGAACTTGCAAAGTTTCTGAAATTCATTCATGACCAGGAGAAGCAAAATATGGTGTTGAATTTCAGTGCATCTCATATACTTCTAGACAAGGATTACAAGCCAAAATTATTTGATTTGCTGTTGTTTAGCGAAGTGAAAATGCTAAAAGAACAATTAACAATGTCAACTGGCTACATCGATCCTTACTTTTCTCTAAGGGGTGGTGAATGGGATAGAAGCTGTGAAGTGTTTTCATTTGGCATTGTTTTGCTTGAACTAGTAACCAAAAGAGTTTCATTCATTGAGAAGAGAGAACATGCAAACTTAAACTTGGACAGTGTGTTACACATTTGGGCCAAGAAGGAATACAAGCCCAATTGTTCTCTAGTCCACGAAAATCTGCAGAAAGATTGGTGTTACTGTGCAGAAGATGGTGTTGAGATGACTCTTCTGGCAGTGCAGTGCATAGAATTTTTTCCATCAAACCGTCCAACAATGAGGGATGTCTTGCAGAGGCTAGATAATCTTTTGGTGTTGCAACGTTTTGCTGATGCTAGAGCAACAAAAAGGGAAAAACAACTCATTTTATTATGA 963 0.3718 MYPTNLLEISSKKLEACTNNFSQNNLIGLTQFGRWFRGYLEGQHVLVKIWDGERMEQISSKYNDEYLIFKAIKFWTNPTLKGYPNLVTLIGYTLERDVKGLVYDLNPLDTLDNLIMKDKLNWLQRINVIHELAKFLKFIHDQEKQNMVLNFSASHILLDKDYKPKLFDLLLFSEVKMLKEQLTMSTGYIDPYFSLRGGEWDRSCEVFSFGIVLLELVTKRVSFIEKREHANLNLDSVLHIWAKKEYKPNCSLVHENLQKDWCYCAEDGVEMTLLAVQCIEFFPSNRPTMRDVLQRLDNLLVLQRFADARATKREKQLILL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02049 320 Pfam Protein kinase domain 23 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02049 320 Gene3D Transferase(Phosphotransferase) domain 1 108 316 - -
Cca01g02049 320 SUPERFAMILY Protein kinase-like (PK-like) 12 302 IPR011009 -
Cca01g02049 320 Gene3D Phosphorylase Kinase; domain 1 2 105 - -
Cca01g02049 320 ProSiteProfiles Protein kinase domain profile. 21 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02049 320 PANTHER RECEPTOR-LIKE KINASE 3 306 - -
Cca01g02049 320 PANTHER OS01G0588500 PROTEIN-RELATED 3 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02049 Cca-Chr1 47602726 47604892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02049 7 292 Receptor kinase-like Gene Family AT4G23150 28.428 6.47e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca01g02049 Pkinase 1.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02049 - - gmx:102662076 551.206