Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02042 ATGGAGAAGCACAAGTGCAAGCTTTGTTTTCGGAGCTTCGCGAATGGAAGAGCCTTGGGAGGTCACATGAGGTCTCACATGATGAACCTACCCGTCGTCCCTCCGAAGCCGAACGAGTTATCGCCGGTTCAACTCAGTTTGGAGGCCGAGTCATCGCCCTCTCAATCCTCCTCTTCCTTCTACGGCCTCAGAGAGAACCCAAAGAAAAGTTTCCGTTTTGCAGATCCTGAATTCTCGTTCGCACCAGACACCGCCTCCGTCATCCTCCAAGACAGAGAGAGCGAGACCGACTCCTCCAAGAACCCAACTCGGAAACGATCCAAGCGACCATGGCAACTCGCTGAAACCGTCAAAAACATCAAATTTACCGAATCTGCAAGCTCCGCTTCCGACACAACAACCGAAGAAGACGTCGCATTTTGTCTCATGATGCTGTCTCGCGACAACTGGGACGAGAATAAACATAAAACCAAACATCGAGAATTAGAACACgacgaggtcgagtacgaggacgaggaagaagaagaagaagaagaagaagaagaagaTGATGAGGATGGTTATGAATCAGAAGAGGTGAAAGTGTCTAAGAAAAGTAACAAAGCTAAAGGGAGGTACAAATGCGAAACGTGTGACAAGGTGTTTCGATCTTACCAAGCTCTTGGTGGACACAGAGCGAGTCACAAGAAGATTAAACTAAACGATGAAACTGAGAATCAAACTGAGCTTGAATCGGAGCATGTTGTGGAGAAGAAAACTCATGAATGCCCGGTTTGTTTCAGAGTTTTTGCTTCGGGTCAGGCTTTGGGAGGACACAAGAGAACGCATGTTATTGGTTCTTCTGCTACTACAACAGCATCTACTACACCTGCGATTGTTAGAACGGTTTCGGTTAGAACTTCGAGTTCGGCTAAAGCTGGAGATAGTTTGTTAGATCTCAATCTCCCTGCTCCGGTTGACGAGGATGATAGCCACTTCGATGACTCTGCTGTTTCAGATGCAGAGTTTGTTAAACTCTGA 1020 0.4451 MEKHKCKLCFRSFANGRALGGHMRSHMMNLPVVPPKPNELSPVQLSLEAESSPSQSSSSFYGLRENPKKSFRFADPEFSFAPDTASVILQDRESETDSSKNPTRKRSKRPWQLAETVKNIKFTESASSASDTTTEEDVAFCLMMLSRDNWDENKHKTKHRELEHDEVEYEDEEEEEEEEEEEDDEDGYESEEVKVSKKSNKAKGRYKCETCDKVFRSYQALGGHRASHKKIKLNDETENQTELESEHVVEKKTHECPVCFRVFASGQALGGHKRTHVIGSSATTTASTTPAIVRTVSVRTSSSAKAGDSLLDLNLPAPVDEDDSHFDDSAVSDAEFVKL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02042 339 MobiDBLite consensus disorder prediction 93 112 - -
Cca01g02042 339 Gene3D Classic Zinc Finger 197 276 - -
Cca01g02042 339 MobiDBLite consensus disorder prediction 87 112 - -
Cca01g02042 339 MobiDBLite consensus disorder prediction 154 196 - -
Cca01g02042 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 276 IPR013087 -
Cca01g02042 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 233 IPR013087 -
Cca01g02042 339 ProSitePatterns Zinc finger C2H2 type domain signature. 208 228 IPR013087 -
Cca01g02042 339 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Cca01g02042 339 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 339 IPR044303 GO:0006355
Cca01g02042 339 MobiDBLite consensus disorder prediction 44 63 - -
Cca01g02042 339 MobiDBLite consensus disorder prediction 166 189 - -
Cca01g02042 339 Pfam C2H2-type zinc finger 205 230 - -
Cca01g02042 339 Pfam C2H2-type zinc finger 254 276 - -
Cca01g02042 339 Pfam C2H2-type zinc finger 4 27 - -
Cca01g02042 339 Coils Coil 159 191 - -
Cca01g02042 339 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Cca01g02042 339 SUPERFAMILY beta-beta-alpha zinc fingers 205 276 IPR036236 -
Cca01g02042 339 SMART c2h2final6 206 228 IPR013087 -
Cca01g02042 339 SMART c2h2final6 4 26 IPR013087 -
Cca01g02042 339 SMART c2h2final6 254 276 IPR013087 -
Cca01g02042 339 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Cca01g02042 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Cca01g02042 339 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02042 Cca-Chr1 47470204 47471635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02042 1 323 C2H2 Transcription Factor Family AT3G60580 46.064 1.28e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca01g02042 zf-C2H2_6 6.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02042 - - gmx:100776462 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02042 01 47470204 47471635 Cca01g02042 01 47470204 47471635 ECH