Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02041 ATGGCTTTGATATTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAGAAAGGATTTGGTTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGAGATGAAAGTGGTCACATGGATGATGATGACCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGCAATGTGCCACCAAGCAACAAACGCATGTATGCCCTTAGAACAAACCCCAATAGACTAAAGAGTTGTAGGGTATGTGAAAATTGTGGCAAAGAGTTCTTGTCATGGAAATCTTTCCTTGAACATGGAAAATGCACCTCTGAAGATGCTGAGTCCTTAGTCTCGTCTCCCGGATCCGATGCCGACGATGGTGGCATCGGCGGTGGTCGTAGAGGATGTGGTTGGTCCAAAAGAAAAAGGTCATTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGTCCATCAAGCGAAGAAGAAGACCTAGCAAATTGTTTAATGATGTTATCCAATGCCATTGTAGATCCCCTAGTGGCTGAGCCTGAAGAATCTTGTGCATCCGCAAGCAAAGAGGAAGAACAACGAAGAAATCCCATGAACTTCATTGCACCATTGTCATACAAAGTtaataacaataataataatcaaaacaacaaCTTTGTTGATAACAAGGCCAAAGGAGTTGCCAAGGGTTTGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGGGCAAGCCACAAAAAGGTTAAAGGGTGTTTTGCTGCAAGACTAGACAACCTTGATGACAATCTCACAGAGGATGACGTCATCACACATGAAGAGTTCTTCCCTACAAAATCATACTCAACCCTCCAATTTGACCATGGCTCCAACCCTACATTGGCCTCTTCATCTAAGAGAAAATCCAAAGTTCATGAATGCTCCATTTGTCACAGGAGCTTCTCTTCAGGACAAGCATTGGGGGGACACAAAAGGTGTCATTGGATCACATCAAATGCACCCGACACCTCTACATTAACAAGGTTTCAACAATTTCATCAAGACCACATGGATCAAATACCAAAATTTGATACCACTTCTGAGCCTCTTGATCTCAAGTTAGACCTCAACCTTCCTGCACCAACTAATGACCTTGCAAGAAGGAATGTGTCTACGGAAATTTACTTACAACCTTGGGTTGCAACAAAGGATGTTGTCAAAGATGATAATAATAGCCAGTGTCAAAGTCTACACCATCCTAATAACAATGTTGATGTGGACAATGATGAGGACAAAAATAACAACAATTCAATGCAAAATGTGGAAAACGAAGCTGATAGTAAGATCAAGTTGGCGAAACTAAGTGAGCTAAAGGACATGAACATTGGTGGCAGTTCTTCACCATGGTTGCAGGTGGGAATTGGTTCAACTTCTACTGATGTTGATACTGATCATTGCTGA 1458 0.4136 MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDADDGGIGGGRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNNNNQNNNFVDNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLTEDDVITHEEFFPTKSYSTLQFDHGSNPTLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHQDHMDQIPKFDTTSEPLDLKLDLNLPAPTNDLARRNVSTEIYLQPWVATKDVVKDDNNSQCQSLHHPNNNVDVDNDEDKNNNNSMQNVENEADSKIKLAKLSELKDMNIGGSSSPWLQVGIGSTSTDVDTDHC 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02041 485 SUPERFAMILY beta-beta-alpha zinc fingers 229 333 IPR036236 -
Cca01g02041 485 MobiDBLite consensus disorder prediction 464 479 - -
Cca01g02041 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 311 333 IPR013087 -
Cca01g02041 485 MobiDBLite consensus disorder prediction 409 444 - -
Cca01g02041 485 Gene3D Classic Zinc Finger 228 333 - -
Cca01g02041 485 Gene3D Classic Zinc Finger 11 103 - -
Cca01g02041 485 PANTHER OS02G0659100 PROTEIN 1 482 - -
Cca01g02041 485 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Cca01g02041 485 MobiDBLite consensus disorder prediction 38 54 - -
Cca01g02041 485 MobiDBLite consensus disorder prediction 38 59 - -
Cca01g02041 485 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Cca01g02041 485 MobiDBLite consensus disorder prediction 464 485 - -
Cca01g02041 485 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Cca01g02041 485 ProSitePatterns Zinc finger C2H2 type domain signature. 313 333 IPR013087 -
Cca01g02041 485 Pfam C2H2-type zinc finger 13 35 - -
Cca01g02041 485 Pfam C2H2-type zinc finger 230 254 - -
Cca01g02041 485 Pfam C2H2-type zinc finger 310 335 - -
Cca01g02041 485 SMART c2h2final6 230 252 IPR013087 -
Cca01g02041 485 SMART c2h2final6 311 333 IPR013087 -
Cca01g02041 485 SMART c2h2final6 13 35 IPR013087 -
Cca01g02041 485 PANTHER OS02G0659100 PROTEIN 1 482 - -
Cca01g02041 485 MobiDBLite consensus disorder prediction 108 128 - -
Cca01g02041 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02041 Cca-Chr1 47446877 47448484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02041 135 377 C2H2 Transcription Factor Family AT1G02040 35.484 9.41e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca01g02041 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02041 - - gmx:100793846 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02041 01 47446877 47448484 Cca01g02041 01 47446877 47448484 ECH