Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g02041 | ATGGCTTTGATATTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAGAAAGGATTTGGTTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGAGATGAAAGTGGTCACATGGATGATGATGACCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGCAATGTGCCACCAAGCAACAAACGCATGTATGCCCTTAGAACAAACCCCAATAGACTAAAGAGTTGTAGGGTATGTGAAAATTGTGGCAAAGAGTTCTTGTCATGGAAATCTTTCCTTGAACATGGAAAATGCACCTCTGAAGATGCTGAGTCCTTAGTCTCGTCTCCCGGATCCGATGCCGACGATGGTGGCATCGGCGGTGGTCGTAGAGGATGTGGTTGGTCCAAAAGAAAAAGGTCATTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGTCCATCAAGCGAAGAAGAAGACCTAGCAAATTGTTTAATGATGTTATCCAATGCCATTGTAGATCCCCTAGTGGCTGAGCCTGAAGAATCTTGTGCATCCGCAAGCAAAGAGGAAGAACAACGAAGAAATCCCATGAACTTCATTGCACCATTGTCATACAAAGTtaataacaataataataatcaaaacaacaaCTTTGTTGATAACAAGGCCAAAGGAGTTGCCAAGGGTTTGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGGGCAAGCCACAAAAAGGTTAAAGGGTGTTTTGCTGCAAGACTAGACAACCTTGATGACAATCTCACAGAGGATGACGTCATCACACATGAAGAGTTCTTCCCTACAAAATCATACTCAACCCTCCAATTTGACCATGGCTCCAACCCTACATTGGCCTCTTCATCTAAGAGAAAATCCAAAGTTCATGAATGCTCCATTTGTCACAGGAGCTTCTCTTCAGGACAAGCATTGGGGGGACACAAAAGGTGTCATTGGATCACATCAAATGCACCCGACACCTCTACATTAACAAGGTTTCAACAATTTCATCAAGACCACATGGATCAAATACCAAAATTTGATACCACTTCTGAGCCTCTTGATCTCAAGTTAGACCTCAACCTTCCTGCACCAACTAATGACCTTGCAAGAAGGAATGTGTCTACGGAAATTTACTTACAACCTTGGGTTGCAACAAAGGATGTTGTCAAAGATGATAATAATAGCCAGTGTCAAAGTCTACACCATCCTAATAACAATGTTGATGTGGACAATGATGAGGACAAAAATAACAACAATTCAATGCAAAATGTGGAAAACGAAGCTGATAGTAAGATCAAGTTGGCGAAACTAAGTGAGCTAAAGGACATGAACATTGGTGGCAGTTCTTCACCATGGTTGCAGGTGGGAATTGGTTCAACTTCTACTGATGTTGATACTGATCATTGCTGA | 1458 | 0.4136 | MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDADDGGIGGGRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNNNNQNNNFVDNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLTEDDVITHEEFFPTKSYSTLQFDHGSNPTLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHQDHMDQIPKFDTTSEPLDLKLDLNLPAPTNDLARRNVSTEIYLQPWVATKDVVKDDNNSQCQSLHHPNNNVDVDNDEDKNNNNSMQNVENEADSKIKLAKLSELKDMNIGGSSSPWLQVGIGSTSTDVDTDHC | 485 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g02041 | 485 | SUPERFAMILY | beta-beta-alpha zinc fingers | 229 | 333 | IPR036236 | - | |
Cca01g02041 | 485 | MobiDBLite | consensus disorder prediction | 464 | 479 | - | - | |
Cca01g02041 | 485 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 311 | 333 | IPR013087 | - | |
Cca01g02041 | 485 | MobiDBLite | consensus disorder prediction | 409 | 444 | - | - | |
Cca01g02041 | 485 | Gene3D | Classic Zinc Finger | 228 | 333 | - | - | |
Cca01g02041 | 485 | Gene3D | Classic Zinc Finger | 11 | 103 | - | - | |
Cca01g02041 | 485 | PANTHER | OS02G0659100 PROTEIN | 1 | 482 | - | - | |
Cca01g02041 | 485 | SUPERFAMILY | beta-beta-alpha zinc fingers | 13 | 101 | IPR036236 | - | |
Cca01g02041 | 485 | MobiDBLite | consensus disorder prediction | 38 | 54 | - | - | |
Cca01g02041 | 485 | MobiDBLite | consensus disorder prediction | 38 | 59 | - | - | |
Cca01g02041 | 485 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 15 | 35 | IPR013087 | - | |
Cca01g02041 | 485 | MobiDBLite | consensus disorder prediction | 464 | 485 | - | - | |
Cca01g02041 | 485 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 232 | 252 | IPR013087 | - | |
Cca01g02041 | 485 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 313 | 333 | IPR013087 | - | |
Cca01g02041 | 485 | Pfam | C2H2-type zinc finger | 13 | 35 | - | - | |
Cca01g02041 | 485 | Pfam | C2H2-type zinc finger | 230 | 254 | - | - | |
Cca01g02041 | 485 | Pfam | C2H2-type zinc finger | 310 | 335 | - | - | |
Cca01g02041 | 485 | SMART | c2h2final6 | 230 | 252 | IPR013087 | - | |
Cca01g02041 | 485 | SMART | c2h2final6 | 311 | 333 | IPR013087 | - | |
Cca01g02041 | 485 | SMART | c2h2final6 | 13 | 35 | IPR013087 | - | |
Cca01g02041 | 485 | PANTHER | OS02G0659100 PROTEIN | 1 | 482 | - | - | |
Cca01g02041 | 485 | MobiDBLite | consensus disorder prediction | 108 | 128 | - | - | |
Cca01g02041 | 485 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 230 | 257 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g02041 | Cca-Chr1 | 47446877 | 47448484 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g02041 | 135 | 377 | C2H2 Transcription Factor Family | AT1G02040 | 35.484 | 9.41e-32 | 122 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Cca01g02041 | zf-C2H2_6 | 1.6e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g02041 | - | - | gmx:100793846 | 842.417 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca01g02041 | 01 | 47446877 | 47448484 | Cca01g02041 | 01 | 47446877 | 47448484 | ECH |