Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02040 ATGCGAGTTCTTAGTTACATGTCTTTTGTTGTAGCATGTTATTCTCTGTTACTAAACCATTGCCATTGTCTCAATCTCGAATTACTTAATGTCTCCAAAATTAAAAACGAGGATGCACAATGGCAAAATGCAGCAGCCACATGGTACGGACCACCAAACGGTGGTGGGACAGATGGGGGTGCATGTGGATACGGTGCTGCTGTGGAGAATCCTCCACTCTCTAAAATGATATCAGCCGGTGGCCCTTCTCTTTTCAGGGGTGGAAGAGGTTGTGGGGCTTGTTATGAGGTGAAATGCAGAGAAAATGGTGCATGCTCAGGAAATCCAGTGAGGGTAATGATAAGTGATGAATGCCCTGGCTGTAACTTACAATCACTCCATTTCGATCTCAGTGGGACTGCCTTTGGTTCCATGGCAACTCCAAACAATGCAGATAACCTTCGCAACGCTGGACAGATTACTATTCAGTACACAAGGGTTGCATGCTCCTTTGGGAAATCCATGGCCTTTGCCATCGATGGTGGGTCCAACCCATACTATTTTGCTACCGAAATTGAATACGAAAATGGGAATGGTGACCTTGTGGACATTGAGTTGAAGCAAGCAAATTCTAACACGTGGCTTCCAATGTTTCGTTCTCAGGGTTCAAGGTGGGCTTTGAACGTTGGTAAACTGTTGCAAGCACCATTCTCTATTAAGCTCACAGAGGATTATGGCAACAACAGAAACAAGACCATTGTGGCTGATACTGTTATTCCATATGACTGGAAACCTGGCCAAGTTTATCGATCTCTCATTAATTTCTAA 807 0.4436 MRVLSYMSFVVACYSLLLNHCHCLNLELLNVSKIKNEDAQWQNAAATWYGPPNGGGTDGGACGYGAAVENPPLSKMISAGGPSLFRGGRGCGACYEVKCRENGACSGNPVRVMISDECPGCNLQSLHFDLSGTAFGSMATPNNADNLRNAGQITIQYTRVACSFGKSMAFAIDGGSNPYYFATEIEYENGNGDLVDIELKQANSNTWLPMFRSQGSRWALNVGKLLQAPFSIKLTEDYGNNRNKTIVADTVIPYDWKPGQVYRSLINF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02040 268 Gene3D - 164 268 IPR036749 -
Cca01g02040 268 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Cca01g02040 268 PRINTS Major pollen allergen Lol pI signature 99 109 IPR005795 GO:0005576|GO:0019953
Cca01g02040 268 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Cca01g02040 268 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Cca01g02040 268 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Cca01g02040 268 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Cca01g02040 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 167 IPR007112 -
Cca01g02040 268 PANTHER EXPANSIN-B3 1 268 - -
Cca01g02040 268 Pfam Lytic transglycolase 78 157 IPR009009 -
Cca01g02040 268 SUPERFAMILY Barwin-like endoglucanases 39 164 IPR036908 -
Cca01g02040 268 Gene3D - 28 163 IPR036908 -
Cca01g02040 268 SUPERFAMILY PHL pollen allergen 167 264 IPR036749 -
Cca01g02040 268 SMART dpbb_1 77 157 IPR007112 -
Cca01g02040 268 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Cca01g02040 268 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Cca01g02040 268 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Cca01g02040 268 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Cca01g02040 268 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Cca01g02040 268 Pfam Expansin C-terminal domain 169 253 IPR007117 -
Cca01g02040 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 264 IPR007117 -
Cca01g02040 268 PANTHER EXPANSIN-LIKE PROTEIN B1 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02040 Cca-Chr1 47424131 47426836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02040 19 268 Expansin Gene Family AT1G65680 51.587 2.16e-92 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02040 - - gmx:100786475 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02040 01 47424131 47426836 Cca01g02040 01 47424131 47426836 ECH