Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02038 ATGAACATTTTCCTCACTTCTCTGCATCCCCTTCCTCGAACTCGATCACCATCGATTTCTGAAATGAGCCAACGTGTCCCTAGCTGCGATGTGGAAGACCACAACAACGTCAACATTCCCACACCCACAAAAACCCCTCTTCCAATTCCCAACTCCAATTTCATTCCCCATGAGGTCCCAATGTTCGGGTACCAAGGCCAAGTAGCATGCATACAGGGACAACCTCGTACCGTAACATCCGGTGCAAGTGGGGGTGCTGCTGGAACCTTGGAGTCCATAGTTAATAATAACCAACACAATTTGGTTACTATGGACGCCTTGGTCCCCTCTTTCATGCAACAGCCGCAGGCTGTGGTGGCGCGTGTGCCCACCACGCGCGACTTCAGTAGTAGTACCAGGGATTGGAGTGTCAGTGCCACTGACACGTGTCCAAGGGACCTTAGTGCTGCTGCTTTCAACTCTGCATCCACCACCTACGACGACCGCGATTCCATTAGCCACCTTAGATCACAGAGTGAAGCACGGAATGAAGATTACAAGAGAAGAAGAGTTGATAGATCTTCTGAATCCAACAAAAGAATCAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGAAGAGATAAGATCAACCAAAGAATGAAGGCATTGCAAAAGCTGGTCCCAAATTCCAGTAAGACGGATAAAGCCTCGATGCTGGATGAGGTGATCCAATATATGAAGCAATTGCAAGCACAAGTGGAAATGATGAATTGGATGAAAATGTACTCGTCCATGATGCTGCCAACAATTACCATGCAACAACAACTTAAAATGTCTATGATGATGGCTCATATGTGCATTGGAATGGGAatgaataaggatgtgattatgaatatgaacaacatgaacatgaacatTCCTGTCATCCCTCCTCTCCTTCACCCAGCTCCGTTCCTGTCTATGAGGGATCAGTTACAAGGAGCACAAGATAAGTCTGTGAACATGGAAGCATATGGGATGGCTGCCTTGTATCACCAGCTGTATAATTCTTCATATTCTAGTTCCAAGACCTGA 1059 0.4476 MNIFLTSLHPLPRTRSPSISEMSQRVPSCDVEDHNNVNIPTPTKTPLPIPNSNFIPHEVPMFGYQGQVACIQGQPRTVTSGASGGAAGTLESIVNNNQHNLVTMDALVPSFMQQPQAVVARVPTTRDFSSSTRDWSVSATDTCPRDLSAAAFNSASTTYDDRDSISHLRSQSEARNEDYKRRRVDRSSESNKRIKASAVHNQSERRRRDKINQRMKALQKLVPNSSKTDKASMLDEVIQYMKQLQAQVEMMNWMKMYSSMMLPTITMQQQLKMSMMMAHMCIGMGMNKDVIMNMNNMNMNIPVIPPLLHPAPFLSMRDQLQGAQDKSVNMEAYGMAALYHQLYNSSYSSSKT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02038 352 CDD bHLH_AtPIF_like 195 257 - -
Cca01g02038 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Cca01g02038 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 262 IPR036638 GO:0046983
Cca01g02038 352 Coils Coil 201 221 - -
Cca01g02038 352 MobiDBLite consensus disorder prediction 162 208 - -
Cca01g02038 352 MobiDBLite consensus disorder prediction 155 208 - -
Cca01g02038 352 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 65 351 IPR031066 -
Cca01g02038 352 PANTHER TRANSCRIPTION FACTOR UNE10-LIKE 65 351 - -
Cca01g02038 352 Pfam Helix-loop-helix DNA-binding domain 199 245 IPR011598 GO:0046983
Cca01g02038 352 Gene3D - 189 256 IPR036638 GO:0046983
Cca01g02038 352 SMART finulus 201 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02038 Cca-Chr1 47374040 47379947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02038 22 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.789 2.24e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g02038 HLH 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02038 - - ccaj:109790803 664.84