Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02035 ATGAAGCAAGTGCAATTCATCCTACTCCTATCACTGTCTCTTGTTCTTTTTTGTCCACCCCTAGTGATCTCAATAGACTCATCTTTCAACGATGATGTGTTGGGGTTGATTGTGTTCAAGGCCGGTCTAGAAGACCCCCAAGGCAAACTCTCTACGTGGAATGAAGAGGATTATAGTCCTTGCAATTGGGTTGGTGTCAAATGTGACCCTGCAACAAATAGGGTATCTTCTCTTGTTCTTGATGGATTTTCTCTTTCTGGCCACGTTGATAGAGGCCTTTTGAGATTGCAGTTCCTTCAGATTCTCTCCCTCTCTAGGAACAACTTCACAGGGACCATAGCTCCTGATCTTCTCAGCATTGGTGATTTACAAGTTGTTGATTTGAGTGAGAACAATCTATCTGGTTCAATCCCAGATGGGATTTTTCAGCAATGTTGGTCTCTAAGAGTAGTATCATTTGCCAACAACAACCTCACTGGTAAGATTCCTGATTCTTTGAGCTCATGCTACTCATTGGCAGTTGTGAACTTTTCCTCTAATCAGCTACATGGGGAACTGCCATCGGGAATATGGTTTTTGAGGGGACTACAGTCAATCGATGTTTCAAATAACTTCTTGGAGGGAGAGATTCCCGAAGGGATTCAGAATCTGTATGACTTGAGGGAGTTGAGGCTAGGGAGGAACCACTTCACTGGTAGGATTCCTCAGGATATTGGAGACTGCTTGCTTTTGAAGTTGGTTGATTTCAGTGGTAATTCTCTCTCTGGGAGACTTCCTGAGTCAATGCAAAAACTCACCTCATGCTCATTCCTCAGCTTGCAAGGGAATTCATTCACAGGAGGCATTCCACATTGGATTGGAGAAATGAGAAGTCTAGAGATATTGGATCTCTCTGCAAATAGATTTTCTGGTTGGATTCCAAATTCAATAGGAAATCTTGACTTGCTGAGTAGATTGAATCTGTCAAGGAATGAGATCACAGGTAACCTGCCAGAGTTGATGGTAAACTGCATTAAGCTTTTGACTCTTGACATCAGCCACAATCACTTGGCTGGCCATCTTCCTTCATGGATATTTAGGATGGGTTTACAAAGTGTTTCTCTTTCAGGGAACAGATTTAGTGAGAGCAATTACCCCTCACTTACTTTCATTCCTGTATCTTTCCATGGCCTTCAGGTTTTGGATTTGTCATCAAATGCATTTTCTGGCCAACTTCCATCTGGAATTGGAGGTCTTAGTAGCTTGCAAGTCTTGAATTTGTCCACCAACAATATCTCAGGTTCTATTCCTGTGAGTATAGGAGAACTTAAATCTTTGTACATTCTTGACTTAAGTTACAACAAGCTAAATGGAAGCATTCCTTCAGAAATAGAAGGGGCAATTTCACTCAGTGAAATGAGGCTACAACAGAACTTCTTAGGTGGGAGAATTCCATCTCAAATTGAGAATTGTCCAGAACTAATATTTCTGAATCTTTCTCACAACAAGCTTATTGGTTCAATCCCTTCAGCCATTGCAAACCTAACCAATCTTCAGTATGTAGATTTCTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTGACAAACCTTTCCCATCTTTTCTCATTTAATGTTTCATACAACCACCTTCAAGGTGAGCTACCAGTGGGTGGCTTCTTCAACACTATCTCTCCTTCATCTGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAATCATTCTTGCCCTTCTGTTCATCCAAAGCCTATTGTCCTAAACCCCAATTCTTCTTACTCCAACTCTGGCTCTTCCTTACAAAACCATCATCATAAGATTATGCTCAGTATTTCTGTCCTTATTGCTATTGGTGCTGCTGTTTTTATTGTCATTGGTGTAGTGGTTGTTACTGTCCTAAATATCCATGCGAGGTCTTCAATGTCACTTTCTGCTGCCCCATTTGTATTCTCTGGTGGCGAGGATTATAGCGGTTCGCCACCGAATGATCCAAACAATGGCAAGCTTGTGATGTTTTCTGGTGATGCTGAATTTGCTGATGGTGCTCATAATCTTCTTAACAAAGAAAGTGAAATAGGGCGTGGTGGATTTGGAGTTGTTTATTGCACTGTCCTTAAAGATGGTCATTATGTTGCAATCAAGAAGCTTACAATGTCCACTTTGAGCAAGTCTCAAGAAGACTTTGAGAGGGAGGTTAAAATGCTTGGGAAGATCAAACATCAAAATCTTGTGGCACTTGAAGGTTATTATTGGACTCCATCCTTGCAGCTCCTAATTTATGAGTACCTAGCCAGAGGGAGTTTGCAAAAGCTTCTACATGATGATGATAGTAGCAAAAATGTGCTTTCTTGGAGGCAAAGGTTCAAGATCATTCTTGGAATGGCAAAAGGGTTGGCCTATTTGCACCAAATGGAGCTAATTCATTACAATCTAAAATCAACCAATGTTTTCATAGATTGTTTGGATGAGCCAAAGATAGGAGACTTTGGCTTGGTGAGGCTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCGGAGTTTGCTTGCCGCACAGTCAAGATAACTGAGAAATGTGACATATATAGTTTTGGAATTTTGATTTTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACAAAGTAAGGAGTGCATTGGATGAAGGCAAAGTGGAGCAATGTGTTGATGAGAAACTTAAGGGTAATTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGGTTTGTGCCTCACAAGTGCCCTCAAACCGTCCAGATATGGCTGAGGTAGTCAACATATTAGAATTGGTCCAATGCCCTTCAGAAGGACAAGAGGAATTACATTGA 2916 0.4126 MKQVQFILLLSLSLVLFCPPLVISIDSSFNDDVLGLIVFKAGLEDPQGKLSTWNEEDYSPCNWVGVKCDPATNRVSSLVLDGFSLSGHVDRGLLRLQFLQILSLSRNNFTGTIAPDLLSIGDLQVVDLSENNLSGSIPDGIFQQCWSLRVVSFANNNLTGKIPDSLSSCYSLAVVNFSSNQLHGELPSGIWFLRGLQSIDVSNNFLEGEIPEGIQNLYDLRELRLGRNHFTGRIPQDIGDCLLLKLVDFSGNSLSGRLPESMQKLTSCSFLSLQGNSFTGGIPHWIGEMRSLEILDLSANRFSGWIPNSIGNLDLLSRLNLSRNEITGNLPELMVNCIKLLTLDISHNHLAGHLPSWIFRMGLQSVSLSGNRFSESNYPSLTFIPVSFHGLQVLDLSSNAFSGQLPSGIGGLSSLQVLNLSTNNISGSIPVSIGELKSLYILDLSYNKLNGSIPSEIEGAISLSEMRLQQNFLGGRIPSQIENCPELIFLNLSHNKLIGSIPSAIANLTNLQYVDFSWNELSGSLPKELTNLSHLFSFNVSYNHLQGELPVGGFFNTISPSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSGSSLQNHHHKIMLSISVLIAIGAAVFIVIGVVVVTVLNIHARSSMSLSAAPFVFSGGEDYSGSPPNDPNNGKLVMFSGDAEFADGAHNLLNKESEIGRGGFGVVYCTVLKDGHYVAIKKLTMSTLSKSQEDFEREVKMLGKIKHQNLVALEGYYWTPSLQLLIYEYLARGSLQKLLHDDDSSKNVLSWRQRFKIILGMAKGLAYLHQMELIHYNLKSTNVFIDCLDEPKIGDFGLVRLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRSALDEGKVEQCVDEKLKGNFAAEEAIPVIKLGLVCASQVPSNRPDMAEVVNILELVQCPSEGQEELH 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02035 971 Pfam Leucine rich repeat 390 449 IPR001611 GO:0005515
Cca01g02035 971 Pfam Leucine rich repeat 290 350 IPR001611 GO:0005515
Cca01g02035 971 SUPERFAMILY RNI-like 248 556 - -
Cca01g02035 971 PRINTS Leucine-rich repeat signature 123 136 - -
Cca01g02035 971 PRINTS Leucine-rich repeat signature 436 449 - -
Cca01g02035 971 Gene3D Phosphorylase Kinase; domain 1 676 763 - -
Cca01g02035 971 CDD STKc_IRAK 693 958 - -
Cca01g02035 971 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515
Cca01g02035 971 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 962 - -
Cca01g02035 971 Pfam Protein tyrosine and serine/threonine kinase 688 955 IPR001245 GO:0004672|GO:0006468
Cca01g02035 971 Gene3D Ribonuclease Inhibitor 309 584 IPR032675 -
Cca01g02035 971 SUPERFAMILY Protein kinase-like (PK-like) 688 961 IPR011009 -
Cca01g02035 971 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cca01g02035 971 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 962 - -
Cca01g02035 971 ProSiteProfiles Protein kinase domain profile. 687 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02035 971 SUPERFAMILY L domain-like 51 309 - -
Cca01g02035 971 Gene3D Transferase(Phosphotransferase) domain 1 764 965 - -
Cca01g02035 971 Gene3D Ribonuclease Inhibitor 29 308 IPR032675 -
Cca01g02035 971 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Cca01g02035 971 SMART LRR_typ_2 436 460 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 338 361 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 120 144 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 289 312 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 313 337 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 217 241 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 193 216 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 508 531 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 388 412 IPR003591 -
Cca01g02035 971 SMART LRR_typ_2 532 556 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02035 Cca-Chr1 47343406 47346501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02035 8 970 Receptor kinase-like Gene Family AT3G56370 59.917 0.0 1118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Cca01g02035 PK_Tyr_Ser-Thr 9.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02035 - - gmx:100791204 1743.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02035 01 47343406 47346501 Cca01g02035 01 47343406 47346501 ECH
Cca07g01759 07 43884931 43889133 Cca01g02035 01 47343406 47346501 PCT