Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02025 ATGAATGATGATAAGTTATCTCAACCGGAATGTCCTAAATCCAACATTGCAGCTGATAGTGATACAAATATAATGACATCAAGTGAAAGCAAGGGTCAGGATCATAAAGGGAAAGGAAAAGCTAGCGGTTGTTGCAATAAGCAAAAGGAAGAAAAAATTTTGAAACATAAATCTCCTGTTGTTTGTTCTAGTGGAGGTCACCCTATTATGTCGCAAGTGCAACCTATGTTAACCCCAATGCAGCATATGGGAACCCCAATGCAGCATATGGGAACCCCAATGCAGGCTATGGTACATCATATGGTACCCCCAATGCAGCCTATGGTACCCCCAATGCAGCCTATGGTACCCCAAGTACAATTCCCAACATATGGGTATGCTGCTTCAAGCCAAGGACTATCAAACTTACCTAACATTGTCGGAGTTCCTTTTTATCGCCACAATACCCAAGTTCCTATTTTATCACAAGCACAGCAGTATTATCATGGACCTCAAGTTGATAATAATGACACATCTTACTTTGGGTTACTTCAAGAGGTCATGAAAAATGAAGGTCAAATGAAGGCTGGAGTGCAATTTCCTCAAAGCGATCAGGTGGTCCAATCAAATCATCCTAGTTCACAACCTAGTAGGAGTAGTAATGTACCAAACAGGGAACAGGTCACACCTAGACATGAAGTGGTTGCTCAGCAAGCAGACTCCCAGACTGTCCCTGAATCTAGATCCCACTCTCCTGTGTTGTGCTTTCAAAAAGCACAGAATATATTTATTCAGTTTCTAATATTGGAAATTGAACTTTTAGCAGTTTCTGATATTGGAAAGTCAGTTACAACATCACTTCCTGACAATGTGATTCTACACACCACCATGGGTGATATACACATGAAATTATACCCAGAGGAATGTCCAAAAATTGTGGAGAATTTCACAACTCACTGCCGAAATGGCTATTATGACAATCTTATTTTTCACAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGATGGCGCAGGTGGGCAGTCTATTTGGGGGAGGGAATTTGAGGATGAATTTCATAAAAGGCTATAG 1083 0.409 MNDDKLSQPECPKSNIAADSDTNIMTSSESKGQDHKGKGKASGCCNKQKEEKILKHKSPVVCSSGGHPIMSQVQPMLTPMQHMGTPMQHMGTPMQAMVHHMVPPMQPMVPPMQPMVPQVQFPTYGYAASSQGLSNLPNIVGVPFYRHNTQVPILSQAQQYYHGPQVDNNDTSYFGLLQEVMKNEGQMKAGVQFPQSDQVVQSNHPSSQPSRSSNVPNREQVTPRHEVVAQQADSQTVPESRSHSPVLCFQKAQNIFIQFLILEIELLAVSDIGKSVTTSLPDNVILHTTMGDIHMKLYPEECPKIVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGAGGQSIWGREFEDEFHKRL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02025 360 MobiDBLite consensus disorder prediction 7 30 - -
Cca01g02025 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 297 312 IPR002130 GO:0000413|GO:0003755
Cca01g02025 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 323 335 IPR002130 GO:0000413|GO:0003755
Cca01g02025 360 MobiDBLite consensus disorder prediction 196 225 - -
Cca01g02025 360 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 284 358 IPR002130 GO:0000413|GO:0003755
Cca01g02025 360 MobiDBLite consensus disorder prediction 196 220 - -
Cca01g02025 360 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 246 360 - -
Cca01g02025 360 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 318 335 IPR020892 GO:0003755|GO:0006457
Cca01g02025 360 MobiDBLite consensus disorder prediction 1 43 - -
Cca01g02025 360 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 280 360 IPR002130 GO:0000413|GO:0003755
Cca01g02025 360 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 246 360 IPR044666 -
Cca01g02025 360 SUPERFAMILY Cyclophilin-like 284 357 IPR029000 -
Cca01g02025 360 Gene3D - 271 360 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02025 Cca-Chr1 47138909 47142082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02025 284 360 U-box Gene Family AT5G67530 49.351 5.00e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02025 K12736 - ccaj:109792835 353.214