Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02021 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACGTTGACGACGACTCGGTGGCGCAAAGGCTGGACCCTGCGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGTTCTGCTTATGAACAATCAACGTATTGTGATATGTTCCACTCAAATGATTCTGGTTGGAGAGAATGCACTTCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATATTGGTGGTGTAAGCTGTATAAACTGTGCAAGGAATTCAGGATTGCAACCTATTGCAAGCAACGAAAAGCCTAGTGGATCTGGGACATCAAAGGTAAACAATGTTGGTGCACAGCAGTATACATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAGTAGGGCATTATGCAGAGAATGATGGTCTTAGGTGCTGGTTCAAACCTCATAATGTTGAAACAGATGGGCCTTCTACAGAAATGAAACCAGAAATTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTGCGAGTCTAATGGATCATCTAAAGCTTCCAAAGCAGAGAGTAAGGCAGACACAGAAATGAGAGATATATATGAATCATTGGCACAGACAAATTTAAGTATGACCCTTGCTGCACCTTTAGGAAATTCAAATCACTTTCAAAGTGCTGTTGTTGATGAAAGGGAACAAAGCAAAACATCTCCACTTTTATTGGGTCCAAGGTCTCGCCATCTTTTACCTAAGCCCCCTAGGTCAACTATTGGCACAGGCTTAGAAGCAAGTGCAGGCATGGTATCCCAGATTCGTGTAGCAAGGCCGCCTGCTGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGTTATTGGCCTAGGATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACAATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCGTGTGCTGAAGCATATTTCCCCCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGCGTAACCCCCTGCATTCAGTCCATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACTGCAGTACAGGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAATCCCACCTAAATGCTCTGTCTAAAAAATGGAACTCAGCCGGTGGTGACATGAATTGGCATAGCATTGACATGCCCGAAAGCAGGAAAAGAGAGGGGTTGCCTTTGCCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGGTTATTGATAGCCAGGATGCGCTGGAGCTGAAACTTACTTGGGAAGAAGCTCAGGATTTGCTTCGTCCACCTCCAACTGTAAAGCCAAGCATTGTCATGATTGAAGATCATGTATTTGAAGAATATGAAGAACCTCCTGTTTTTGGAAAGAGGAGTATCTTTGTAGTTCGATCAACTGGGATAAACGAGCAGTGGGTGCAGTGTGATAGTTGCTCAAAATGGCGGAAGCTGCCAATTGATGTACTTATTCCCCCAAAATGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTGCTGCTCCTAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGCTGAATAAAGAATTCAAGAAACAAAGACTGGCAGCAAGCCAGAGACCAGCCCTGGAACATGCATCTTCAGGACTAGATGCTTTGGCAAATGCAGCTATACTTGGGGATGATGCAAATGACTCTGGCAGGACACCAGTTGTTACCACTACAAAACATCCTCGGCATAGACCCGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACGTGCAATGTGTGCATGACAGTTAAACGGCGATTCAAAACCCTGATGATGCGAAAGAAGAAGCGCCAATCTGAACGTGAAGCTGAGATTGCTCAGAGAAACCAGTTATCATGGAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGGCAATTAACACCGGTTGATGGTGTGGAGAATGAAGTAAAGGTGCCAAATGAGCTGGATTCAAGGAGCCAAGACCATGTGACTGAAGCTACCAAGGGACAACTAGACTTGAATTGCCAACCTGATCGAGAAGACATGCAAGCTGCGCCAAACAGCATGAGCATGACGAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGGCTCACTAGCTTGATATCAGAGCAACAAACAAATTCAGCTTCAAATGTGCAGCAGGCACACACAACCAATGAGAGTGAGGGAAGACGTAATGAGGATTGCTGCACTGCTTCTGTTATTCATGAGCAGGAAAGCAGTCCTGAAGAGAACAGTGGGCAAGATAAGGACCAAAACAATTCACTCTCATGA 2721 0.4458 MESRSCMNVACATLTTTRWRKGWTLRSGEFADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDIGGVSCINCARNSGLQPIASNEKPSGSGTSKVNNVGAQQYTSLANQLNVRGMQVGHYAENDGLRCWFKPHNVETDGPSTEMKPEILPSVGELGSTLISQFHCESNGSSKASKAESKADTEMRDIYESLAQTNLSMTLAAPLGNSNHFQSAVVDEREQSKTSPLLLGPRSRHLLPKPPRSTIGTGLEASAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSESHLNALSKKWNSAGGDMNWHSIDMPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLVIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSTGINEQWVQCDSCSKWRKLPIDVLIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALEHASSGLDALANAAILGDDANDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRQLTPVDGVENEVKVPNELDSRSQDHVTEATKGQLDLNCQPDREDMQAAPNSMSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQQAHTTNESEGRRNEDCCTASVIHEQESSPEENSGQDKDQNNSLS 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02021 906 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 857 - -
Cca01g02021 906 CDD B3_DNA 318 419 IPR003340 GO:0003677
Cca01g02021 906 Gene3D - 298 425 IPR015300 -
Cca01g02021 906 SMART B3_2 320 420 IPR003340 GO:0003677
Cca01g02021 906 MobiDBLite consensus disorder prediction 853 868 - -
Cca01g02021 906 Pfam CW-type Zinc Finger 590 632 IPR011124 GO:0008270
Cca01g02021 906 Gene3D - 588 644 - -
Cca01g02021 906 ProSiteProfiles B3 DNA-binding domain profile. 320 421 IPR003340 GO:0003677
Cca01g02021 906 ProSiteProfiles Zinc finger CW-type profile. 585 635 IPR011124 GO:0008270
Cca01g02021 906 SUPERFAMILY DNA-binding pseudobarrel domain 317 420 IPR015300 -
Cca01g02021 906 MobiDBLite consensus disorder prediction 739 773 - -
Cca01g02021 906 Pfam B3 DNA binding domain 320 419 IPR003340 GO:0003677
Cca01g02021 906 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 857 - -
Cca01g02021 906 MobiDBLite consensus disorder prediction 237 266 - -
Cca01g02021 906 MobiDBLite consensus disorder prediction 882 906 - -
Cca01g02021 906 MobiDBLite consensus disorder prediction 853 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02021 Cca-Chr1 47115526 47124326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02021 1 875 B3 DNA Binding Superfamily AT4G32010 49.660 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca01g02021 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02021 - - gmx:100778833 1704.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02021 01 47115526 47124326 Cca01g02021 01 47115526 47124326 ECH