Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02020 ATGGGGTGTTTCACTGTCTTGAAATACAAGAAGAAAAAGACAGATCATATCATATACTCAAAATGTGTCAGCCATAATGAACATGTACCTAGAGTACTGCCTCAACCTCAACCTCATTTGCTGAAGTCTGCACCTCCTAGTTTTAGGACTAGAGTGAAATCTATTCACCCAATTAACAAAGTTACCAATAACAGAACACGGGCATTATCGGCTCCATCATCTCTTGATGTAACCAAACAAGATGCTCTAACCACAGTTGAGTTTGAGGAATGCGAAGAATCTAGATACCAAGCGGTATCAATGAAGGAGCAGCATTCATCTAATCCACAACCTTTACCTCTTCCATCTAGTAGTGGTGGCAGTGCATTGAAGGCTACTGGGAGCTTTAAGTCAGGCACAACTAGTGGTCGTATATATCGACCAGCTCATGATGCAGCTGAACAGGATGCTTTGGCCTCAGTTGAGTATGAGGAACAAGAAGAGTCAAAACACCGAGTTGGATTGATGAAGGAGCAATCTTCTTCTAATCCGCAACCTTTGCCTCTTCCATCTCGTCAGGGTAGTGGTGGTGCATTGAAGGCCAATGGCAGCTTTAAGTTGGGGATGGCTACTGCTCCTATATATGTTTCAGGACCTTTGCCTCTTCCGCCTACAGGATTGCTTAGAAACTTTCCATTTGAGGAAATTGCTTCTGCTTGCCACAATTTCTCTTCAGATCGGTGCATGTCAGAATGTCTTTCTTCTACCATGTATAGCGCTTCATTTGGTGACGATGCTTCAAGTGCAAAGAAGTTTGAAGCCACTGTCACCCGCCTTCATTCATCAACCCAGGGACTGAAGGACTTTATAAATGATGTTAATACCCTTGCATCATTGCAACATCCAAACCTATGTAAATTGCTGGGATTTCATGCACGTGATGGTTCTGAACCAAGGATGTTGGTTTATGAGAGGCTACGCCATGGAAGCTTGGACCGCATGTTGTTTGGGAGATCTGATGGCCCTTCAATTGATTGGAACTCGCGAATGAAAATTGCCATATGTGCTGCACAAGGTCTTGCTTTCCTGCATGAAGAAGGGCCTTTCCAGGCAATGTATAAAGAATTTTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAGCTTTCTGGATATGGTTGTGTTGGACGTATTCCTGAGGAAGAGATTTCAACCGGTTCATCTGCTATTGGAAACCTGTCAGTGGAGACATTTGAAAGAGGAATTCTTACTCCAAAAAGCAATGTATGGTGTTTTGGAATTGTTCTATTGGAGCTACTTACTGGCAGGAAGAATCTTGAAAGCCATCACCCCAAGGAAGAGAGGAACTTGGTCAAGTGGAGTCGGCCTTTCCTTGCTGATGATTTTCGACTGTCACTGATAATGGATCCTCAATTTAAAGGCCGTTTTCCTCCCAAAGCAGCAAGAACAGTAGCTGACATTGCACAGAGATGCCTCCAAAAGGAGCCATCAGAAAGACCCACCATGAGAACCATTGTTGAGCATCTCAAAATGGTACAAGATATGAAGTACTCTTGTTGGTTTCCACTGCAAGAACCTGCAGCTATGTCTTCAAAACAAATTTCAAGATCACCAAGTCTTAATGGTATCATATGTCGTGCACCTAGGTTTACTTCCTCTCCACCAATAGCCATGCCATCTGTTTCATCTCCAAGATGGCCTGCTATGCCTGCGCTGCATCTTCCTCTTCACTCTTGTTCCTCCGCCCTGTCTGTGGAGGAGCTTGGTAGGCCAGAAAGCAGGAACTCATCATCCTCAGTGTGTAGGGGAGCTAGCGTTGAAGGATATTGA 1836 0.4401 MGCFTVLKYKKKKTDHIIYSKCVSHNEHVPRVLPQPQPHLLKSAPPSFRTRVKSIHPINKVTNNRTRALSAPSSLDVTKQDALTTVEFEECEESRYQAVSMKEQHSSNPQPLPLPSSSGGSALKATGSFKSGTTSGRIYRPAHDAAEQDALASVEYEEQEESKHRVGLMKEQSSSNPQPLPLPSRQGSGGALKANGSFKLGMATAPIYVSGPLPLPPTGLLRNFPFEEIASACHNFSSDRCMSECLSSTMYSASFGDDASSAKKFEATVTRLHSSTQGLKDFINDVNTLASLQHPNLCKLLGFHARDGSEPRMLVYERLRHGSLDRMLFGRSDGPSIDWNSRMKIAICAAQGLAFLHEEGPFQAMYKEFSTANIQIDKDFSAKLSGYGCVGRIPEEEISTGSSAIGNLSVETFERGILTPKSNVWCFGIVLLELLTGRKNLESHHPKEERNLVKWSRPFLADDFRLSLIMDPQFKGRFPPKAARTVADIAQRCLQKEPSERPTMRTIVEHLKMVQDMKYSCWFPLQEPAAMSSKQISRSPSLNGIICRAPRFTSSPPIAMPSVSSPRWPAMPALHLPLHSCSSALSVEELGRPESRNSSSSVCRGASVEGY 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02020 611 MobiDBLite consensus disorder prediction 169 183 - -
Cca01g02020 611 MobiDBLite consensus disorder prediction 154 189 - -
Cca01g02020 611 Gene3D Phosphorylase Kinase; domain 1 217 317 - -
Cca01g02020 611 Pfam Protein tyrosine and serine/threonine kinase 264 511 IPR001245 GO:0004672|GO:0006468
Cca01g02020 611 ProSiteProfiles Protein kinase domain profile. 244 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02020 611 PANTHER RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 217 604 - -
Cca01g02020 611 PANTHER RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 149 213 - -
Cca01g02020 611 PANTHER RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 45 143 - -
Cca01g02020 611 PANTHER OS01G0588500 PROTEIN-RELATED 217 604 - -
Cca01g02020 611 PANTHER OS01G0588500 PROTEIN-RELATED 45 143 - -
Cca01g02020 611 PANTHER OS01G0588500 PROTEIN-RELATED 149 213 - -
Cca01g02020 611 Gene3D Transferase(Phosphotransferase) domain 1 319 522 - -
Cca01g02020 611 MobiDBLite consensus disorder prediction 97 137 - -
Cca01g02020 611 SUPERFAMILY Protein kinase-like (PK-like) 217 524 IPR011009 -
Cca01g02020 611 MobiDBLite consensus disorder prediction 100 135 - -
Cca01g02020 611 MobiDBLite consensus disorder prediction 590 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02020 Cca-Chr1 47111036 47115131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02020 211 515 Receptor kinase-like Gene Family AT4G02010 36.013 5.36e-52 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Cca01g02020 PK_Tyr_Ser-Thr 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02020 - - aprc:113849641 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02020 01 47111036 47115131 Cca01g02020 01 47111036 47115131 ECH
Cca07g01754 07 43824809 43830141 Cca01g02020 01 47111036 47115131 PCT