Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02012 ATGGTGATATTTTTGGTCTTGCTACTTGTTTGGCTTCCTAGTGGCAGCTATGGCCAAGAAGCTGGTGTTGGTGGCTGGGGGGCTGCACGTGCCACATTCTATGGTGGCCAAGACGCTTCTGGGACATTAGGAGGAGCATGCGGATACGGAAACTCGGTTTTCCAAGACTATGGAGTGCTCACAACAGCATTAAGCACTGCACTTTTCAACAATGGTTTCATTTGTGGTGCATGTTTCCAAATAGTTTGCCACAATGACCCTAAGTGGTGCATCCCTGGAGCAGCCCCTATCACCGTCACTGCAACAAACTTTTGTCCCCCAAATGACTCCTTATCCAACGGCCCTGGCTGGTGCAACCCCCCACTTCAACATTTTGATCTATCACAGCCAGCTTTCACCAAAATTGCTCTATACAGATCTGGAGTTGTTCCTGTGCTCTACAGAAGGGTGACGTGTGTGAGGAGGGGAGGGATAAGGTTCACCATGAATGGCAATCCATACTTCAACATGGTGTTGGTAGCGAATGTGGGAGGTGCAGGAGATGTGAAAGCAGTGTCAATAAAAGGTTCATCAACTGGGTGGCAACCAATGTCAAGAAACTGGGGTCAGAATTGGCAAAGCAACACATATTTCGTTGGCCAGAGCCTCTCCTTTGTAGTCACGACTAGTGATGGTCGATCATTGACCAATTTCAATGTTGTACCTGCGAATTGGAAATTTGGACAGAGTTTTGTTGGTCGTCAGTTTTGA 750 0.476 MVIFLVLLLVWLPSGSYGQEAGVGGWGAARATFYGGQDASGTLGGACGYGNSVFQDYGVLTTALSTALFNNGFICGACFQIVCHNDPKWCIPGAAPITVTATNFCPPNDSLSNGPGWCNPPLQHFDLSQPAFTKIALYRSGVVPVLYRRVTCVRRGGIRFTMNGNPYFNMVLVANVGGAGDVKAVSIKGSSTGWQPMSRNWGQNWQSNTYFVGQSLSFVVTTSDGRSLTNFNVVPANWKFGQSFVGRQF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02012 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Cca01g02012 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cca01g02012 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cca01g02012 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cca01g02012 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Cca01g02012 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Cca01g02012 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Cca01g02012 249 SUPERFAMILY Barwin-like endoglucanases 6 175 IPR036908 -
Cca01g02012 249 Pfam Lytic transglycolase 61 147 IPR009009 -
Cca01g02012 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Cca01g02012 249 Gene3D - 157 249 IPR036749 -
Cca01g02012 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cca01g02012 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cca01g02012 249 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Cca01g02012 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Cca01g02012 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Cca01g02012 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Cca01g02012 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Cca01g02012 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Cca01g02012 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Cca01g02012 249 Gene3D - 12 152 IPR036908 -
Cca01g02012 249 PANTHER EXPANSIN-A15 4 249 IPR002963 GO:0009664
Cca01g02012 249 SMART dpbb_1 61 147 IPR007112 -
Cca01g02012 249 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Cca01g02012 249 PANTHER EXPANSIN 4 249 - -
Cca01g02012 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 157 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02012 Cca-Chr1 47022139 47024441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02012 4 249 Expansin Gene Family AT2G40610 63.306 1.08e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02012 - K20628 gmx:100797425 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02012 01 47022139 47024441 Cca01g02012 01 47022139 47024441 ECH