Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02009 ATGTACAAGGGGAGATTAGGAGGCAAAGCTCAGCTTGGATATGTTGAAACTGACCCATCTGGTCGATATGGACGTTTCAGGGACATTCTAGGCAAAGGAGCAGTGAAGGTAGTGTATAGGGCATTTGATGAGGTGCTAGGAATAGAGGTGGCTTGGAACCAAGTGATGCTTGGTGATGTCTTTCATTCACCAGAACTACTTCCACGCCTTTACTCAGAGGTTCATCTCCTCAAGAACTTGGAACATCACTCCATCATGACCTTCCATGATTCTTGGATTGATGTCAAATGTAGAAGCTTCAACTTCATCACCGAATTGTTCACCTCTGGCACCTTACGAGAGTATAGAAAGAAGTACCAGAGAATAGATATCAGAGCAGTAAAAAACTGGGCACGCCAGATTCTAAGTGGTTTGGAGTATTTGCACAGTCATGATCCTCCTGTGATACATAGAGACCTCAAGTGCGACAATATCTTCATCAATGGCCATTTAGGACAGGTCAAGATTGGTGACTTGGGCCTTGCAGCCATTCTTCGTGGCTCCCAACATGCACACAGTTCTTCAGGTACTCCAGAATTCATGGCACCAGAATTGTATGAAGAGGAATACAATGAGCTGGTAGACATATATTCCTTTGGGATGTGTATGATAGAAATTTTCACTTCTGAGTTCCCATACAGCGAGTGCTCCAACCCTGCTCAGATATACAAGAAAGTTACTTCGGGGAAGCTGCCAGATGCCTTTTACAGAATCCAAGACTTGGAAGCCCAGAGATTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGCCAGCAAAGGAGCTCTTGTTGGACCCATTTTTAGCCACGGACCAACTAGTCTCGCCACTTCCTAGCCCAACATTGCCCAAAAAACAAACTCACACACTCAATTTCACTACACCACTTGCCAAAGAGCTACCTTCAATGAGTGACCACCAAACAAAGGACACACACATGACAATCACTGGATCAATCAATGAAGAGGATGACACAGTTTTCCTTAAAGTTCAGATTTCTAACAAAAACGGGCAAAAGAGAAACATATTCTTTCCATTTGACACCATAAACGACACTGCCATTGATGTGGCGGTGGAGATGGTTAAAGAACTGGAAATTAGTGACTTGGAACCATTGGAGATTGCTGAAATGATAGAGGAAGAGATATCAGCTTTAGTCCCAACATGGAAGGATTGGGGCACTTCTAAGTATCAAAAACAACATAGTTTTAGCTATGAAGAAGAGTATGATATGAGTAACCACCACTCTTTCTTCTCACCATCTTCACGCTCTTCCTCTTATGGTTCTCTTCCGGTGTTTGGTTCTTCCTACAACAATAATAATTCCTTCTCACCATCTTCACTCTCTTCCTCTTATGGTTCTCTTCCGGTGTTTGGTTCTTCCTACAACAATAATAATTCCCACCTTCGTGGGAACCATTACCCTTTTGCTCAAGAGTGGCCTCAAGATGATCTATTTATGAACGATGATGCAAGCTCTCAAAGCTCAATGAACTCCTTCAAGTGTTTCGATTTCAACTGCTGTGACCCGGGAAATGAAGATGAGCATGGTCCAACTCTAGTGGTGGGAGCAAAACCCTTTTGCTACACCCCAAAAGGCAACGAAAAGTGCACAAGGTTCTGTCCTCGAGAAGAAGTGATGGATGTTGATTTCACCAAACAATTTTGCAACATGAGAATGGACTCTCACAGGTGTCATGGAATCCACAAGCTAACTAGGATTCGTTCCTTTGTGGATTTGAGGAGACAACAACTGCAACGGTCACTGATGGAAGAGATACACAAGAGGAGGATGTTCAAGACGGTTGGTGCCATTGAGAATATTGGGTTTCAGAATCCAGAAGGAGGTGGATGTTTTTCTTATTGA 1908 0.4324 MYKGRLGGKAQLGYVETDPSGRYGRFRDILGKGAVKVVYRAFDEVLGIEVAWNQVMLGDVFHSPELLPRLYSEVHLLKNLEHHSIMTFHDSWIDVKCRSFNFITELFTSGTLREYRKKYQRIDIRAVKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLAAILRGSQHAHSSSGTPEFMAPELYEEEYNELVDIYSFGMCMIEIFTSEFPYSECSNPAQIYKKVTSGKLPDAFYRIQDLEAQRFVGKCLANVSERLPAKELLLDPFLATDQLVSPLPSPTLPKKQTHTLNFTTPLAKELPSMSDHQTKDTHMTITGSINEEDDTVFLKVQISNKNGQKRNIFFPFDTINDTAIDVAVEMVKELEISDLEPLEIAEMIEEEISALVPTWKDWGTSKYQKQHSFSYEEEYDMSNHHSFFSPSSRSSSYGSLPVFGSSYNNNNSFSPSSLSSSYGSLPVFGSSYNNNNSHLRGNHYPFAQEWPQDDLFMNDDASSQSSMNSFKCFDFNCCDPGNEDEHGPTLVVGAKPFCYTPKGNEKCTRFCPREEVMDVDFTKQFCNMRMDSHRCHGIHKLTRIRSFVDLRRQQLQRSLMEEIHKRRMFKTVGAIENIGFQNPEGGGCFSY 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02009 635 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 456 627 - -
Cca01g02009 635 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 456 - -
Cca01g02009 635 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02009 635 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02009 635 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02009 635 Gene3D Transferase(Phosphotransferase) domain 1 107 289 - -
Cca01g02009 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Cca01g02009 635 SUPERFAMILY Protein kinase-like (PK-like) 26 437 IPR011009 -
Cca01g02009 635 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 456 627 - -
Cca01g02009 635 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 7 456 - -
Cca01g02009 635 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02009 Cca-Chr1 46933435 46938517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02009 12 424 MAP Kinase Kinase Kinase AT3G51630 67.874 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca01g02009 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02009 K08867 - gmx:100816187 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02009 01 46933435 46938517 Cca01g02009 01 46933435 46938517 ECH
Cca07g01737 07 43568380 43578045 Cca01g02009 01 46933435 46938517 PCT