Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02008 ATGGCGATTTCTTGTGAAGCGTTCCCAACCCGAAAACGACGAGCCTCGGGAGGGTCGTTTAGCAACCTCCTGCACTCTCTGCTTCAAGTGACGGATGAGATATGTTCCCTCACCAACACCGCCAACTTCCTCCTCAACCGCACTTCCTCCTCTACCATCCGCAAAACGCAGCTCCTCGGCGTCGTTTTCGAGGACCTCATTCGCCTTTCCAATTCCAACTCCCTTTTGCTCCCCTACTCTCTCATCCTCTGCCTCGAGGAAATGTACATCGTTCTCCACAAGATCAAAACGCTAATCGAAGATTGCTCCAACGGAAGAAGCAAGTTCAATCTGCTCGTGCAAATCGAAACCGTCGCCGACACCTTCCACAGGCTCACCGGAGAACTCTCCACGCTACTCGATGTTTTCCCTCTCCAAGAACTCCACCTAAACGACGACGTTCGGGAACTCGTTATCCTCCTGCGGAAACACTGCTCTGAATCCATACCGTTCGTCCAAGCCGAACAGATAAACCTCCGGAACGACGTCGTTTCCGTCCTCGACCGGATCAAGCACGAGATCGTTCCCGATCAAGCGCATCTCTCTTTGATTTTCGACAAACTCGAGATTCGCGACGCCTCCACCTGCAGAGCGGAGATTGAGAGCCTCGAGGAGGAGATTATCAATCGGAGCGAGGAGCAATCCAAAACTGACCTCGTCGCGTTGATCGGCCTCGTTCGTTTCGCCAAGTGCGTTCTCTTCGGCGCGTCAACGCCGTCGCCGAGAGCCGCCGTTATGCGGCGGAACCAGTCGTCGGAGCTAGCGGTTCCGGCGGATTACCGGTGTCCTATAAGCCTAGAACTAATGCGCGACCCCGTCGTCGTGGCCACCGGACAGACGTACGATCGCGCATCAATCAAACTCTGGATGGATTCTGGACACAACACGTGTCCGAAAACAGGTCAAACGTTATCTCACACCGACTTAATCCCCAATCGCGTGCTGCGGAACATCATAGCAACGTGGTGCCGCGAGCAGAGAATCCCCATCGAAGCGGAAGCAGTCATAGGGAAACTCAACGGCGGTGTAACGAACAAGGCGGCGTTAGAAGCCACGCGAATGACGGTGACGTTTTTAGTGAATAAGCTCAAGGACAACAGCAACAAACCTTTTGTTGAAGACACAAACGGCGTCGTTTACGAGCTTCGGGTGTTGGCGAAAACAGACTCGGACAGCCGAGCCTGTATTGCCGAAGCGGGAGCGATTCCGCTTTTGGTTCGGTTCCTAAGCTTGGACGTGGGGGCGGAGAATCCGAGCCTGCAGGTTAACGCCGTGACGACGATTTTGAATCTGTCTATTCTGGAAGCGAATAAGACGAGGATAATGGAGACTAACGGCGCGTTAAACGGCGTTGCGGAGGTTTTGCTTTCGGGTGCCACGTGGGAGGCGAAAGCAAATGCGGCTGCGACGGTGTTTAGTTTATCGGGTGTGGCGGCGTTTAGGAAGAGGCTTGGGAGGAAGACACGTGTCGTGAGTGGGTTGGTGGACTTGGCGCGGAGTGGGCCCGAGGGGGCCAAGCGCGACGCACTGGCGGCGATACTGAACCTCGCGTCGGATAGGGAGACGGTGGGGCGGTTGGTGGAGGGGCGTGTGGTGGAGATGACGACGGAGGTCATGGCGGTGATGCCGGAGGAGGGGGTCACGATTCTCGAGGCGGTGGTGAAGAGGGGAGGGCTGGTGGCGGTGGCGGCGGCGTACGCGGGGATTAAGAGGCTGGGGGCGGTCTTGAGGGAGGGGTCGGAGAGGGCGAGGGAGAGCGCGGCGGCCACGCTGGTCACCATGTGTCGGAAGGGGGGGTCGGAGATTGTGGCGGAGCTGGCCGCGGTTCCCGGGGTGGAGAGGGTCATTTGGGAGCTCATGGCGGTGGGGAGTGTGAGGGGGCGGCGGAAGGCGGCAACGCTATTGAGGATTTTGCGGCGGTGGGCGGCGGGGCTGGATGCCGGAGAGAGTGAGGGATTCTCGACCATTACCATGGCCACAAGCCCTCTCGCCTTACCGGCTCAGGGCTGGAAGGCAAGTGTACCCTCCcgGAAAACTCGTGATTGTCGGCAAAAGTCCGGCTGGGCGAGTATAAATAACTCGAAGACTGCagccgGCCACAAGCCCTCTCGCCTTATCGACTCAGGGCTGCAAGCCCTCTCGCCTTATTGGCTCAGGGCTAGAAGGCAAGTGTACCTTCCCGGTAAAATTCTGACTAGACCCCCCACTCGTCTAATATTCGACTGGTCTTCCAGGCCACAAGCCCTCTCGCCTTATCGGCTCAGGGCTGGAAGGCAAGTGTACCCTCCcggtaaaatcccgacttga 2346 0.5703 MAISCEAFPTRKRRASGGSFSNLLHSLLQVTDEICSLTNTANFLLNRTSSSTIRKTQLLGVVFEDLIRLSNSNSLLLPYSLILCLEEMYIVLHKIKTLIEDCSNGRSKFNLLVQIETVADTFHRLTGELSTLLDVFPLQELHLNDDVRELVILLRKHCSESIPFVQAEQINLRNDVVSVLDRIKHEIVPDQAHLSLIFDKLEIRDASTCRAEIESLEEEIINRSEEQSKTDLVALIGLVRFAKCVLFGASTPSPRAAVMRRNQSSELAVPADYRCPISLELMRDPVVVATGQTYDRASIKLWMDSGHNTCPKTGQTLSHTDLIPNRVLRNIIATWCREQRIPIEAEAVIGKLNGGVTNKAALEATRMTVTFLVNKLKDNSNKPFVEDTNGVVYELRVLAKTDSDSRACIAEAGAIPLLVRFLSLDVGAENPSLQVNAVTTILNLSILEANKTRIMETNGALNGVAEVLLSGATWEAKANAAATVFSLSGVAAFRKRLGRKTRVVSGLVDLARSGPEGAKRDALAAILNLASDRETVGRLVEGRVVEMTTEVMAVMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEIVAELAAVPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDAGESEGFSTITMATSPLALPAQGWKASVPSRKTRDCRQKSGWASINNSKTAAGHKPSRLIDSGLQALSPYWLRARRQVYLPGKILTRPPTRLIFDWSSRPQALSPYRLRAGRQVYPPGKIPT 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02008 781 Coils Coil 206 226 - -
Cca01g02008 781 Gene3D - 352 575 IPR011989 -
Cca01g02008 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 347 IPR013083 -
Cca01g02008 781 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Cca01g02008 781 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 34 669 - -
Cca01g02008 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 459 IPR000225 GO:0005515
Cca01g02008 781 Pfam Armadillo/beta-catenin-like repeat 403 445 IPR000225 GO:0005515
Cca01g02008 781 SUPERFAMILY RING/U-box 265 341 - -
Cca01g02008 781 PANTHER U BOX DOMAIN-CONTAINING 34 669 - -
Cca01g02008 781 SMART arm_5 402 446 IPR000225 GO:0005515
Cca01g02008 781 SUPERFAMILY ARM repeat 371 651 IPR016024 -
Cca01g02008 781 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Cca01g02008 781 CDD RING-Ubox_PUB 273 315 IPR045210 -
Cca01g02008 781 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02008 Cca-Chr1 46925638 46930964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02008 1 657 U-box Gene Family AT5G01830 56.036 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02008 - - gmx:100805405 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02008 01 46925638 46930964 Cca01g02008 01 46925638 46930964 ECH