Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02007 ATGCTCCACCAAGGTGCAACGTCGACGACAAAGGACGAGGCAGTGATAGGTGTCGTTTTGTTCGGAAAATACGAGATTCTCAAATTACTAGGCGTTGGCGGCTCCGCCAAGGTCTACCACGCGCGGAACGTTCACACCGCGCAGAGCGTGGCGGTTAAGGCCGTCAGCAAGCGCACGCTAGAGAGAAACGGTTACGCGGCGCACGTGGAGCGGGAAGTGGCTATCATGCGCCGCCTGCGCCACCCCCACACCGTGCGTCTCTACGAGGTCCTCGCCACGAAGTCCAAGATCTACTTCGTCATGGAGTTCATCGCCGGCGGCGAACTCTTCCACGTGGTCGCCGGCGAGGGCCGTCTCACGGAGGACACCAGCCGCCGCTACTTTCGCCAGCTGGTGTCCGCCGTGAGGCACTGCCACTCGCGCGGCGTCTTCCACCGCGATCTCAAGCTGGACAACCTCCTCGTGGACGGAGACACGAACCTCAAGGTCTCCGACTTCGGCTTGGGCGCGCTGAGGAGCCAGATTCGACACGACGGCATGCTCCACACCGTGTGTGGGACCCCTGCCTACGTGGCACCCGAGATTCTCGCGCGGAAAGGGTATCACGGTGCCAGCGTGGACGCGTGGTCGTGCGGCGTCGTTTTGTTCGCGCTCAACGCCGGGTACTTGCCCTTCAATGATTCCAACATTACCGTTCTTTATAGGAAAATCTACAGAGGACAGTTCCGGTTTCCGAGGTGGATGTCGAGCGAACTCAGAAACCTCGTCACGAGGTTGTTGGACACGAATCCCGATACGAGGATAACTCTTGATGAGGTCACGCGGGACCCGTGGTTCAACCGGGGCGGCTATTCGGATACTATAACCCGACCCGAGGAGTGGGGAGAAACCCGGGTTGTGACCAAGTGTTTGAACGCGTTTGACTTGATATCTTTTTCGTTTGCGGATATGTCGGGTTTGTTTAGTGACCCGGAGTATTCGGATTTCACGGAGCGGTTCgtgacgagggaggtgccggagagtgttatggtggcggtgagggaggtggcggtgacggtgacggaaaacgtgacggcgacgAaggatgagagtggctgtggaggagtgaggattgaggggtTGGATGGGAACTTTGTGGTTATGGTTGGGTTTTACCGGTTAACGGATGAGCTGGTTATGGTTgaggtgaagaggagagagagaaaagagggaagtggggagcggTTTTGGAGAGATGTGTTGAGGCCCTTGCTTCTTGCATTGGCTCATTACCCGGTTTCTCGGTGA 1287 0.5019 MLHQGATSTTKDEAVIGVVLFGKYEILKLLGVGGSAKVYHARNVHTAQSVAVKAVSKRTLERNGYAAHVEREVAIMRRLRHPHTVRLYEVLATKSKIYFVMEFIAGGELFHVVAGEGRLTEDTSRRYFRQLVSAVRHCHSRGVFHRDLKLDNLLVDGDTNLKVSDFGLGALRSQIRHDGMLHTVCGTPAYVAPEILARKGYHGASVDAWSCGVVLFALNAGYLPFNDSNITVLYRKIYRGQFRFPRWMSSELRNLVTRLLDTNPDTRITLDEVTRDPWFNRGGYSDTITRPEEWGETRVVTKCLNAFDLISFSFADMSGLFSDPEYSDFTERFVTREVPESVMVAVREVAVTVTENVTATKDESGCGGVRIEGLDGNFVVMVGFYRLTDELVMVEVKRRERKEGSGERFWRDVLRPLLLALAHYPVSR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02007 428 Pfam NAF domain 302 352 IPR004041 GO:0007165
Cca01g02007 428 CDD CIPK_C 305 418 - -
Cca01g02007 428 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 8 421 - -
Cca01g02007 428 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02007 428 PANTHER - 8 421 - -
Cca01g02007 428 Gene3D Transferase(Phosphotransferase) domain 1 104 283 - -
Cca01g02007 428 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Cca01g02007 428 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02007 428 ProSiteProfiles NAF domain profile. 299 322 IPR018451 GO:0007165
Cca01g02007 428 Gene3D Phosphorylase Kinase; domain 1 18 103 - -
Cca01g02007 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Cca01g02007 428 Gene3D Kinase associated domain 1, KA1 299 423 - -
Cca01g02007 428 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02007 428 SUPERFAMILY Protein kinase-like (PK-like) 20 299 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02007 Cca-Chr1 46897695 46899592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02007 19 419 CBL-interacting serine-threonine protein kinases AT2G30360 53.545 1.14e-152 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca01g02007 Pkinase 4.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02007 - K12761 gmx:100788245 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02007 01 46897695 46899592 Cca01g02007 01 46897695 46899592 ECH