Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02006 ATGGAGCAAAAAGGAGGTGTGCTTATGCAAAGATATGAACTGGGAAGATTATTAGGCCAAGGAACCTTTGCGAAGGTTTACCATGCTAGGAACCTCATAACTGGCGCGAGTGTGGCCATTAAAATTGTTGATAAGGAGAAGATTCTGAAAGTTGGGATGATTGATCAGATCAAGCGCGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTGGTTGAGCTTTACGAGGTAATGGCCAGCAAAACCAAAATTTACTTTGTAATGGAGTATGTAAAAGGTGGTGAGCTCTTCAACAAGGTATCCAAAGGAAAGCTCAAGCAGGACGATGCAAGGAGATATTTTCAGCAATTGATCAGTGCTGTTGACTACTGCCATAGTAGAGGTGTGTGCCATCGCGATCTGAAACCTGAAAACCTTCTACTGGATGAAAATGGGAATTTGAAGATCTCAGATTTTGGGTTAAGTGCCCTTGCTGAAACTAAGCACCAAGACGGATTACTCCATACTACATGTGGTACCCCTGCCTATGTTGCACCAGAAGTGATAAACAGAAGAGGCTATGATGGTGCCAAAGCTGATATATGGTCATGTGGGGTGATCTTGTATGTTCTATTGGCTGGTTTTCTTCCATTTAGAGACCCAAATCTGATGGAGATGTACAGGAAGATTGGCAAGGGAGAATTCAAATTCCCTAACTGGTTTTCACCAGAT 714 0.4258 MEQKGGVLMQRYELGRLLGQGTFAKVYHARNLITGASVAIKIVDKEKILKVGMIDQIKREISVMRLIRHPHVVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKISDFGLSALAETKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILYVLLAGFLPFRDPNLMEMYRKIGKGEFKFPNWFSPD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02006 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cca01g02006 238 SUPERFAMILY Protein kinase-like (PK-like) 8 237 IPR011009 -
Cca01g02006 238 Gene3D Transferase(Phosphotransferase) domain 1 3 238 - -
Cca01g02006 238 SMART serkin_6 12 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02006 238 PANTHER - 2 238 - -
Cca01g02006 238 Pfam Protein kinase domain 12 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02006 238 PIRSF ILK 1 234 - -
Cca01g02006 238 ProSiteProfiles Protein kinase domain profile. 12 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02006 238 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cca01g02006 238 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02006 Cca-Chr1 46874594 46875307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02006 1 237 CBL-interacting serine-threonine protein kinases AT5G01810 79.325 2.10e-147 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca01g02006 Pkinase 4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02006 K07198 - gmx:100815651 474.937