Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01999 ATGGCACCAAAGGTGGAGAAGAAGCCACAGGAGAAGAAGCCCACGGAGGAGAAGAAATCCACTGTGGGAGAGAAGGCTCCGGCGAAGGCGGGGAAGAAGCTTCCAAAGgaaggaggagagaagaagaagaagaggtcgaagaagaaCGTGGAGACGTACAAAATCTACATCTTCAAGGTTCTGAAGCAGGTTCACCCAGACATTGGGATCTCAAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATTTTTGAGAAGCTTGCTCAGGAATCTTCTAGACTCGCGCGATACAACAAGAAGCCCACTATCACTTCAAGGGAAATTCAGACCGCGGTCAGGCTCGTGCTGCCCGGAGAATTGGCAAAGCATGCTGTCTCTGAGGCTCTTGCATCCTCAGCTTTGTCAAAATTGGCACCAAGTCACTATGACTTCTCGTGCCCTAATGCTTTGAGCACCATCAAAAGTGTCGTAGAGGCTGAGGTACAGAAAGAGTACCGTATGGGCGCATCCTTGCTACGCTTGCACTTCCATGATTGTTTTGTTAACGGTTGTGATGGTTCAGTTCTTCTAGACTCCACATCCTCCATTGACAGTGAAAAGAATGCAAAACCTAATTTCCAATCTGCTAGAGGATTTGATGTGGTGGATGAGATAAAGGAGGCAGTGGACAAAGCATGTGGAAAACCACTTGTTTCTTGTGCAGATATATTGGCTGTTGCTGCTCGTGACTCAGTGGTTGCGTTAGGAGGGCCAACATGGGAGGTGTTACTTGGGAGAAGAGACTCCACCACAGCAAGTCGTAAAGCAGCAGATGCAAACATTCCTGCACCAACTTTTAACCTCTCTCAACTCATCAGAAACTTCAAGAAGCATGGTCTCGATGAGAAGGACCTTGTTGTTCTTTCAGGAGGCCACGCCATAGGATATGCACGTTGTGTTTTTTATAGAGACCATATCCACAATGACTCCAACATCGATCACAAGTTTGCACGAAAACTTAAGAAGATTTGCAAGAGAAATGGTGGTGACTTCAACCTTGCTCCTTTGGACCCAACTTCACCCGCGAACTTTGACACAAACTATTTCTCTAATTTGGTTCTAAAGAGAGGGCTTCTTCACTCTGATCAACAACTCTTCAATGGGGGTTCTACTGATGCACTAGTTGAGTTTTACAGTTTCGATACCGAAGCTTTCTACAAGGACTTCGCGAATTCGATGATTAAGATGGGAAATATTAAGCCCCTTAGTGGGGATCAAGGTGAAATTCGTGTTAACTGCAGGAAAGTGAACTAA 1299 0.4465 MAPKVEKKPQEKKPTEEKKSTVGEKAPAKAGKKLPKEGGEKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEALASSALSKLAPSHYDFSCPNALSTIKSVVEAEVQKEYRMGASLLRLHFHDCFVNGCDGSVLLDSTSSIDSEKNAKPNFQSARGFDVVDEIKEAVDKACGKPLVSCADILAVAARDSVVALGGPTWEVLLGRRDSTTASRKAADANIPAPTFNLSQLIRNFKKHGLDEKDLVVLSGGHAIGYARCVFYRDHIHNDSNIDHKFARKLKKICKRNGGDFNLAPLDPTSPANFDTNYFSNLVLKRGLLHSDQQLFNGGSTDALVEFYSFDTEAFYKDFANSMIKMGNIKPLSGDQGEIRVNCRKVN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01999 432 ProSitePatterns Peroxidases active site signature. 170 181 IPR019794 GO:0004601
Cca01g01999 432 SUPERFAMILY Histone-fold 25 131 IPR009072 GO:0046982
Cca01g01999 432 Pfam Core histone H2A/H2B/H3/H4 6 116 IPR007125 GO:0003677
Cca01g01999 432 SMART h2b3 43 141 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca01g01999 432 PANTHER PEROXIDASE 137 431 - -
Cca01g01999 432 MobiDBLite consensus disorder prediction 1 37 - -
Cca01g01999 432 ProSiteProfiles Plant heme peroxidase family profile. 138 432 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 Gene3D - 143 432 - -
Cca01g01999 432 SUPERFAMILY Heme-dependent peroxidases 139 432 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 MobiDBLite consensus disorder prediction 1 45 - -
Cca01g01999 432 Gene3D Histone, subunit A 4 140 IPR009072 GO:0046982
Cca01g01999 432 PRINTS Haem peroxidase superfamily signature 251 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Haem peroxidase superfamily signature 170 184 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Haem peroxidase superfamily signature 299 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Haem peroxidase superfamily signature 233 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Haem peroxidase superfamily signature 352 367 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 ProSitePatterns Peroxidases proximal heme-ligand signature. 299 309 IPR019793 -
Cca01g01999 432 PRINTS Plant peroxidase signature 232 242 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Plant peroxidase signature 366 383 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Plant peroxidase signature 172 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Plant peroxidase signature 350 365 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Plant peroxidase signature 212 225 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Plant peroxidase signature 298 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Plant peroxidase signature 406 419 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 PRINTS Plant peroxidase signature 148 167 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 CDD secretory_peroxidase 138 431 IPR033905 GO:0004601|GO:0042744
Cca01g01999 432 Pfam Peroxidase 156 394 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01999 432 Gene3D Peroxidase, domain 2 277 411 - -
Cca01g01999 432 PANTHER PEROXIDASE 72-RELATED 137 431 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01999 Cca-Chr1 46777405 46781980 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01999 137 432 Peroxidase AT5G05340 58.725 2.02e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01999 K00430 - gmx:100802035 492.271