Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01997 ATGGCATCGCGTGGGTATTTCTTTGTTCTTCTCCATGCCTTTGTGTATGTGGCTCTTGCAACCTCAGCTTTGTCACAATTGACACCAAATTACTATGACTACTCGTGCCCCAAAGCTTTGAGCACCATCAAAAGTGTCGTAGAGGCTGCAGTGAAGAAAGAGTACCGTATGGGTGCATCCTTGCTACGCTTGCATTTCCATGATTGCTTCGTTAACGGCTGTGATGGTTCAGTTCTTCTAGACTCCACATCCTCCATTGACAGTGAAAAGAATGCGCGTGCTAATTTTCAATCCGCTAGAGGGTTTGAAGTGGTGGATAAGATAAAGGAAGCAGTTGACGAAGCATGTGGAAAACCAGTTGTTTCTTGTGCTGATATATTGGCTGTCGCCGCTCGTGATTCTGTCGTTGCGTTAGGTGGGTCAACATGGGATGTGAAACTTGGGAGAAGAGACTCCACCACAGCAAGTCGTGAAGCAGCAGATGCAAACATTCCTGCACCAAATTTTAACCTCTCTCAACTCATTACCAACTTCAAGAACCATGGTCTCGATGAGAAAGACCTTGTTGTCCTTTCAGGAGGCCACAACATTGGATATGCACGATGTGTTTCATTTAGGGACCACATGTACAATGACTCCAACATTGACCCTAGCTTTGCACAACAGCTTAAATACATTTGCCCTAGAAATGGAAGTGACTCCAACCTTTCCCCTTTGGACCAAACAGCTGCACACTTTGACAAAGCCTATTTCTCTGATTTGGTTCATAAGAAAGGGCTTCTTCACTCTGATCAAGAACTCTTCAATGGTGGTTCCACTGATGCACTAGTTAAACAGTATAGTAATGATGTTGAGGCTTTCAATGAGGACTTCGCGAATTCGATGATTAAGATGGGTAACATTCAACCCCTCACTGGGAATCGAGGTGAAATTCGTGTTAATTGCAGGAAAGTGAACTGA 960 0.4427 MASRGYFFVLLHAFVYVALATSALSQLTPNYYDYSCPKALSTIKSVVEAAVKKEYRMGASLLRLHFHDCFVNGCDGSVLLDSTSSIDSEKNARANFQSARGFEVVDKIKEAVDEACGKPVVSCADILAVAARDSVVALGGSTWDVKLGRRDSTTASREAADANIPAPNFNLSQLITNFKNHGLDEKDLVVLSGGHNIGYARCVSFRDHMYNDSNIDPSFAQQLKYICPRNGSDSNLSPLDQTAAHFDKAYFSDLVHKKGLLHSDQELFNGGSTDALVKQYSNDVEAFNEDFANSMIKMGNIQPLTGNRGEIRVNCRKVN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01997 319 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Cca01g01997 319 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PANTHER PEROXIDASE 21 318 - -
Cca01g01997 319 ProSiteProfiles Plant heme peroxidase family profile. 26 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 Gene3D Peroxidase, domain 2 165 298 - -
Cca01g01997 319 PANTHER PEROXIDASE 72-RELATED 21 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 Gene3D - 30 316 - -
Cca01g01997 319 CDD secretory_peroxidase 26 318 IPR033905 GO:0004601|GO:0042744
Cca01g01997 319 Pfam Peroxidase 44 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01997 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01997 Cca-Chr1 46760040 46761855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01997 25 319 Peroxidase AT5G05340 60.067 2.64e-128 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01997 K00430 - gmx:102663236 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01997 01 46760040 46761855 Cca01g01997 01 46760040 46761855 ECH