Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01996 ATGGCGTCTCATAAATGTTTCTCTGTTGTCCTCTATGCCCTTGTGTTTACAGCTTTTGCAACTACAGCATTTTCATCATTGTCAACAAATTACTATGACTACTCTTGCCCTAACGCTTTGAACACCATTCGAAGTGTTGTGGAGGCTGCGGTGCAGAAAGAGTACCGTATGGGCGCTTCATTGCTGCGATTGCACTTCCATGATTGTTTTGTTAACGGTTGTGATGGTTCAATTCTACTAGACCCTTCACCCACCATTGACAGCGAAAAAAATGCACGTCCTAATTTTCAATCTGCTAGAGGTTTTGAAGTGGTGGATGAGATCAAGGAGGCAGTGGACAGAGCATGTGGAAAACCAGTTGTTTCTTGCGCTGACATATTGGCTGTTGCAGCTCGTGACTCTGTTGTTGCTTTAGGTGGTCCAACATGGAAGGTGACACTGGGGAGAAGAGACTCCACCACAGCAAGCCGCGAAGCAGCAGATGCAAACATTCCAGCACCATTTTTCAGCCTTTCTGAACTTATTGGCAACTTCAAGAGCCATGGCCTAAACGAGAAGGACCTCGTTGTTCTTTCTGGAGGCCACTCAATTGGATATGCACGTTGTGCTACGTTTAGAGATCACATCTACAACGACTCTAACATCAGTCCCCAGTTTGCAAAAGAGCTCAAGTACATTTGCCCTAGAGAAGGAGGTGACTTCAACCTTACTCCTTTGGACCGCACAGCAGCCAACTTTGATTCGGGCTATTACAAAGATTTGGTTCATAACAAAGGGGTTCTTCACTCCGATCAAGAACTCTTCAATGGTGGTTCTACCGATGAATTGGTTAAAAAATATAAGCACAATACCGTTTCTTTCCATCAGGACTTTGCAAATTCTATGATTAAGATGGGAAACATAAAACCTCTCACTGGGAATAGAGGTGAAATTCGCTTGAACTGCAGGAAAGTGAACTAA 960 0.4406 MASHKCFSVVLYALVFTAFATTAFSSLSTNYYDYSCPNALNTIRSVVEAAVQKEYRMGASLLRLHFHDCFVNGCDGSILLDPSPTIDSEKNARPNFQSARGFEVVDEIKEAVDRACGKPVVSCADILAVAARDSVVALGGPTWKVTLGRRDSTTASREAADANIPAPFFSLSELIGNFKSHGLNEKDLVVLSGGHSIGYARCATFRDHIYNDSNISPQFAKELKYICPREGGDFNLTPLDRTAANFDSGYYKDLVHNKGVLHSDQELFNGGSTDELVKKYKHNTVSFHQDFANSMIKMGNIKPLTGNRGEIRLNCRKVN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01996 319 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Cca01g01996 319 PANTHER PEROXIDASE 23 318 - -
Cca01g01996 319 CDD secretory_peroxidase 27 318 IPR033905 GO:0004601|GO:0042744
Cca01g01996 319 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 ProSiteProfiles Plant heme peroxidase family profile. 26 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 SUPERFAMILY Heme-dependent peroxidases 27 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Cca01g01996 319 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 PANTHER PEROXIDASE 72-RELATED 23 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 Pfam Peroxidase 44 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01996 319 Gene3D - 30 316 - -
Cca01g01996 319 Gene3D Peroxidase, domain 2 165 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01996 Cca-Chr1 46721648 46723667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01996 27 319 Peroxidase AT5G05340 59.122 5.15e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01996 K00430 - gmx:100812820 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01718 07 43213769 43218361 Cca01g01996 01 46721648 46723667 PCT