Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01995 ATGGCTGGAGTTTCTCACCAAAGGGTGATTTTTCCTGACTTCAAACTCAAAATCGGTTTGTTCTTATGTCTTGTTGGGATAGTTTCAGCTTCAGATTTAACTTCTTCAGCAACAGATGCTGTTACTTCAGCTGAATATCAGTTGAGCACTAGTTTTTATAATTTACGGTGTCCCTTGGCCCTTCTTACCATTAAGACACTAGTAACCGCTGCTGTGTTGAAAGAGCCTCGCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAGGATGCGATGCATCGGTTTTATTGAACGACACGGCAACTTTCGTGGGCGAACAAAATGCATTCCCCAACCGTAATTCTCTAAGGGGTTTCCAAGTCATAGAGGACATAAAAACAAAACTAGAGTTTTTGTGCCCTGGTGTTGTCTCTTGCGCTGACATCCTAGCCGTTGCTGCAAGGGATTCTGTCGTTGCTCTTGGTGGACTTGGTTGGCAAGTTGGCTTGGGCAGAAGGGACTCAACCACTGCAAGTTTAAGTGGAGCTAACTCAGATTTACCAGCTCCATTTCTGGATCTCAATGCCCTTATTGCTGCTTTCCAAAAGAAGACTTTCACAGTAGATGAAATGGTTGCTTTATCAGGTGGGCACACAATAGGCAGGGGCAGGTGTGTAACCTTCCGATCAAGGATTTACAACGAAAGCAACATAGATTCCACATATGCAAACCGAATGAGAGAGAATTGTCCCAAGATAGGTGGTGATGACTCCTTGTCTCCTTTGGACATCACCTCTCAAGACGTTTTCGACAGTGCTTACTTCAGGAACTTGATTTCCGAAAAGGGTCTTTTCCACTCTGATCAACAACTCTATAGTGGCGGTTCCACGGACTCCAAGGTTGAAGACTATGCCACCAACCCATTACTCTTCAGATCAGATTTTGCTAAGGCCATGCTCAAGATGAGTAACCTTAGCCCTCTTACCGGCGCACAGGGTCAGATCAGAAAAGTGTGCAGCAGAGTGAATTGA 1023 0.4506 MAGVSHQRVIFPDFKLKIGLFLCLVGIVSASDLTSSATDAVTSAEYQLSTSFYNLRCPLALLTIKTLVTAAVLKEPRMGASLLRLHFHDCFVQGCDASVLLNDTATFVGEQNAFPNRNSLRGFQVIEDIKTKLEFLCPGVVSCADILAVAARDSVVALGGLGWQVGLGRRDSTTASLSGANSDLPAPFLDLNALIAAFQKKTFTVDEMVALSGGHTIGRGRCVTFRSRIYNESNIDSTYANRMRENCPKIGGDDSLSPLDITSQDVFDSAYFRNLISEKGLFHSDQQLYSGGSTDSKVEDYATNPLLFRSDFAKAMLKMSNLSPLTGAQGQIRKVCSRVN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01995 340 PANTHER PEROXIDASE 72-RELATED 43 340 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Haem peroxidase superfamily signature 141 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Haem peroxidase superfamily signature 159 171 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Haem peroxidase superfamily signature 207 222 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Haem peroxidase superfamily signature 260 275 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 ProSitePatterns Peroxidases proximal heme-ligand signature. 207 217 IPR019793 -
Cca01g01995 340 Gene3D - 52 337 - -
Cca01g01995 340 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
Cca01g01995 340 CDD secretory_peroxidase 47 339 IPR033905 GO:0004601|GO:0042744
Cca01g01995 340 ProSiteProfiles Plant heme peroxidase family profile. 47 340 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 SUPERFAMILY Heme-dependent peroxidases 47 340 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 Pfam Peroxidase 66 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 121 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 140 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 159 174 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 206 218 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 258 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 274 291 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PRINTS Plant peroxidase signature 314 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g01995 340 PANTHER PEROXIDASE 43 340 - -
Cca01g01995 340 Gene3D Peroxidase, domain 2 185 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01995 Cca-Chr1 46624022 46628284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01995 45 340 Peroxidase AT5G05340 58.054 2.45e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01995 K00430 - gmx:100811432 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01995 01 46624022 46628284 Cca01g01995 01 46624022 46628284 ECH
Cca01g01995 01 46624022 46628284 Cca05g01339 05 31419607 31423938 ECH
Cca01g01995 01 46624022 46628284 Cca01g00595 01 7523298 7527958 ECH
Cca07g01717 07 43208602 43211664 Cca01g01995 01 46624022 46628284 PCT