Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01990 ATGGATTCTAGGCGGCGTAAAAATGCAGCTATGCAAGGCAAGTTGCAACAGCTTCGATCGGTCACAAATTCCAGTGCTGTTAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGTTGAAGCAAAAAGTGGACGGATTGAACTCAGAGCTTGGAACCGCTGAATCATCATCAATCTCCCAAGACGAACTACCCATGGTCACCGTGGAAACCCTAGAAAGGGGTTTTCTCATTAATGTGTTTTCAGAAAGGAATTGCCCCGGCATGCTTGTGGCAATACTCGACGCCTTCGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTTCAGCTTGAAGCGGTTGGAGGAGAAAGTCAAGAGAACGAAAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTGCAAGCGATCCAAAACATGGATTAA 453 0.4658 MDSRRRKNAAMQGKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSSISQDELPMVTVETLERGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAIQNMD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01990 150 Gene3D - 1 65 IPR036638 GO:0046983
Cca01g01990 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 150 - -
Cca01g01990 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 57 IPR036638 GO:0046983
Cca01g01990 150 CDD ACT_UUR-ACR-like 90 146 - -
Cca01g01990 150 ProSiteProfiles ACT domain profile. 81 150 IPR002912 -
Cca01g01990 150 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 150 - -
Cca01g01990 150 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01990 Cca-Chr1 46469446 46471369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01990 11 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 26.667 2.02e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01990 - - gmx:100500546 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01655 05 35938490 35939978 Cca01g01990 01 46469446 46471369 ECH
Cca07g01714 07 43133252 43135320 Cca01g01990 01 46469446 46471369 ECH
Cca01g01990 01 46469446 46471369 Cca05g01655 05 35938490 35939978 ECH
Cca01g01990 01 46469446 46471369 Cca01g01990 01 46469446 46471369 ECH
Cca05g01331 05 31330512 31332682 Cca01g01990 01 46469446 46471369 ECH
Cca01g00600 01 7646423 7648577 Cca01g01990 01 46469446 46471369 ECH
Cca01g01990 01 46469446 46471369 Cca05g01331 05 31330512 31332682 ECH
Cca01g01990 01 46469446 46471369 Cca01g00600 01 7646423 7648577 ECH