Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01974 ATGTCTTTGAGTTTCACTGACCTCCTTTCAACCAACAACAGCAATAGCATGACCATGGATGATGATCCTTTTGGACTTGAATTTGCCAACAACTTCAAGTCCCTTCAACCTCTTTCACTGCCTCACTCTTCTCCTTCATCAATCTTCCCTTCTTACTCTAGTTTCCCACCTGGTTTTGGCCCAACACAGCCATTGAATTCACCTCTCTTACTTTCTTCTCAAAATGTTCCTGCATCTTACCCAGATGAGTCATCTTCTAGCATGAACTTCAACATGAGAAACAGTTCAACCGAGGAAGAACAAGGTAGAAACTACTCTGACCACTCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAACAAAAAACAAACTACATGCCTCTCTTTCAATCCTCCACAAACATGTTTCAAGTGGATCCACCAAGAGACGATCCACCAATGATATTCAATGAAGCTGCAAAGCAAACACATTTTTCATCTGAGAGGACAGCAACAAAACCTGAATATGCATCAACTCAGGGCTTCTCCACAGAAATGGCCTCAACAAAACCTGAAATACCAAGCAATTCTGCTTCTGGGTCTGTTCATTTTAACTCCACTAGTGCTTTCAAGTCTATTAGAGAACTAAAGAGATCAGACGATGGGTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGCGAAAATCCAAGAAGTTATTACAAGTGCACACACCAGGGTTGCCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATGTTACTGAAATAGTATACAAGGGGAGTCACAATCATCCCAGGCCTCAGTCTACAAGAAAAACTGGTTCTCAATTAATTAATCAAACTTCTTCATCCTGCACCAACTCAGGGATCTCTGATCAATCTATGGGAGAGGAAGATTTTGAGCAAACATCCCAAACTAGTTATTCTGGAGAGGGTGATGATCACCTTGGACCAGAGGCCAAAAGGAAAAGAGTGAATGAAAATGATGGTTATTCCTATTCCTCCTCTGGGAGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGACGGATACAGATGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAACCCAAACCCCAGGAGCTATTACAAATGTGTAGCCCCGGGTTGTCCAGTGAGAAAACATGTTGAGCGAGCTGCACATGACATGAAAGCTGTGATTACAACTTATGAAGGGAAACATAACCATGATGTACCTATAGGAAGAGGATATTCAAGCTATAGCATGAACAGAACTTCTCTAAATAACAACACCACCAGCAATGTAACAGCACCTGCCCCTATAAGGCCCCTACCAGTGACTAATTTTTCTAACAAAGCAAGTTTCAGCAATTCACTTGATGACACAAAGCTACCAATATCTGCAAGTCAAGAACCTTTTTCAATGGACTTTTTGCTGAGCCCCGGAAGCCTTGGATTTTCGGCTAATGACTCATCATTCCTTCAGTCTTTTTTGTCAAAGAACTTCTAG 1587 0.3945 MSLSFTDLLSTNNSNSMTMDDDPFGLEFANNFKSLQPLSLPHSSPSSIFPSYSSFPPGFGPTQPLNSPLLLSSQNVPASYPDESSSSMNFNMRNSSTEEEQGRNYSDHSFXXXXXXXXXXXXXXXXXXXXXXXXXXQQKTNYMPLFQSSTNMFQVDPPRDDPPMIFNEAAKQTHFSSERTATKPEYASTQGFSTEMASTKPEIPSNSASGSVHFNSTSAFKSIRELKRSDDGYNWRKYGEKQVKGSENPRSYYKCTHQGCPTKKKVERSLEGHVTEIVYKGSHNHPRPQSTRKTGSQLINQTSSSCTNSGISDQSMGEEDFEQTSQTSYSGEGDDHLGPEAKRKRVNENDGYSYSSSGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERAAHDMKAVITTYEGKHNHDVPIGRGYSSYSMNRTSLNNNTTSNVTAPAPIRPLPVTNFSNKASFSNSLDDTKLPISASQEPFSMDFLLSPGSLGFSANDSSFLQSFLSKNF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01974 528 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 13 526 - -
Cca01g01974 528 SUPERFAMILY WRKY DNA-binding domain 370 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 ProSiteProfiles WRKY domain profile. 224 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g01974 528 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 Coils Coil 137 139 - -
Cca01g01974 528 MobiDBLite consensus disorder prediction 51 99 - -
Cca01g01974 528 SUPERFAMILY WRKY DNA-binding domain 223 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 Gene3D WRKY domain 214 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 MobiDBLite consensus disorder prediction 335 349 - -
Cca01g01974 528 MobiDBLite consensus disorder prediction 1 23 - -
Cca01g01974 528 MobiDBLite consensus disorder prediction 273 359 - -
Cca01g01974 528 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 526 IPR044810 GO:0003700
Cca01g01974 528 SMART WRKY_cls 378 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 SMART WRKY_cls 229 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 Pfam WRKY DNA -binding domain 230 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 Pfam WRKY DNA -binding domain 379 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 Gene3D WRKY domain 365 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01974 528 MobiDBLite consensus disorder prediction 51 110 - -
Cca01g01974 528 MobiDBLite consensus disorder prediction 284 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01974 Cca-Chr1 46079452 46082501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01974 224 504 WRKY Transcription Factor Family AT2G38470 53.698 7.85e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g01974 WRKY 1.4e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01974 01 46079452 46082501 Cca01g01974 01 46079452 46082501 ECH