Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01971 ATGGCTTTAGCAGTGGTTGGTGGTGCCTTCCTCTCTGCTTTCATTAACGTTCTCTTTGACAAGCTAGCTTCCCCAGAAGTTGTCAACTTCATCCGCGGAAAGAATCCTGGCAAGTTGCTTCAAGCGGTTAACAACAAGCTGTTACTTGTTAGCCATGTGTTTGAGGATGCCGAGAAGAGACAGATCACAGACCCCAATGTCAAAAAGTGGCTCAATGTTCTCAAAGATCTTGTCTATGAGGTTGACGACTTACTCGATGAAGTTTCTACTAAAGCTGCAACTCAAAAGAAGGTAAACAAACACTTCTCTCCCTTTATCAATAGAAAGAAGATAGTTAGTACCAGTAAGTTGGAGGACATAGTTGAAAGACTAGATGATCTTTTAAAACAAAAGCTGAGTCTTGATTTGAAAGAGATTCCAGTGGAGATCGAGCAATGGAAAGCTCAGCCAACATCTCTCGAAGATGGATATGGTATATATGGTAGGGAGAAAGACAAGGAAGCCATAATCAAGTTGTTGTTAGAGGATAACGTTCATGATGAACACGTGTCTGTGATTCCTATTGTAGGCATGGGTGGAGTTGGGAAAACCACTTTAGCCCGATCTGTGTACAATGATGGTAATTTGAATAAGGAATTTGATTTACATGCATGGGTCTGTGTGTCTGACAAATTTGATATTGTTAAGGTCACAAAAACTTTGATAGAACAGGTTACCCATGAATCTTGTAGATTGAATGATCTAGATTCACTTCAGCTTGAGTTGATGGACAAGTTGAAAGATAAAAAATTCTTAATTGTCTTGGATGATGTTTGGATCAAGTCTAATGATAATTGGAGAAGTCTTAAAAAACCATTTCTAAGTGGGATCAAGGGAAGTAAAATTCTCATGACAACTCGCAACAAAAATGTTGTGGAAAAAACCTCTTTTCATATTGTTGGAGTTTATCCTCTGGACAAATTGTCAAATGAAAATTGTTGGTTAGTATTTGCGAACCATGCATTTCCTCCCTCCGAATCCAATGAGAATAGAAGTGCTCTAGAAAAAATTGGAAGGGAGATCGTTAAAAAGTGTGATGGATTGCCTTTAGCAGCACAGTCGCTTGGAGGTATGTTGAGAAGAAAGCATGCTATTAGGGATTGGAATAATATACTTCATAGTGACATTTGGAAACTTCCTGAAAATCATTGTGAAATTATTCCAGCATTGAGGATTAGTTATCATTATCTCCCTTCACATTTAAAACGGTGTTTTGTGTATTGTTCATTGTATCCTAAGGATTATATATTTAAGAAAAATGAATTAATCTTGTTGTGGATGGCTGAAGATCTTCTAAAAGCACCAGAAAATGGAAAGACGTTAGAAGAAGTTGGTTCCGAGTATTTTGATGATTTGGTTTCGACATCCTTTTTTCAACATTATAGTTCGTACAATACTTTTGTGATGCATGATCTTATGCATGATCTAACAATATCACTTGGTGGAGAATTCTACTCGAGATCAGAAGAACTAGGAAAGGAAACCAAGATCGATGTCAAGACTCGTCATCTATCCTTTACCAAATTTAGTGATCCAGTTACGGAACACTTTCAAGCATTTGGTAGCGTAAAATTTTTGAGAACTTTCTTGCCAGTTTATCTTGAAGATTCTCCCTTCAACAATGAAAAGGCAACATATATTATATCATCAAAGCTTCCATACTTGAGAGTTTTATCATTTCGTGGCTTTGATAGTTTGCATGTTTTGCCTAACTCAATAGGTGAATTGATCCATTTGCGTTATTTGAATCTTTCAGAGACAAGAATACAAACACTACCCGAATCAGTGTGTAATTTGTTCAATCTACAAACATTGAAGTTGAATTGTTGCTTCCAGCTCACTAAATTGCCTAGTGACATGCAAAATCTGGTAAACCTCCGCCATCTTGATATTCGAGGAACTCATATAGAAGAGATGCCTAGAGGAATAGGAAAATTAAACCATTTACAACAATTACATTTCTTTCCTGTGGGCAAGCATAAGGAGAATAGCATCAAAGAATTGGGAGGACTTTCGAATCTTCACGGCTGGCTTCTTATTAAGAATTTGGAGAATGTTACCAACTGTAATGAAGCATTGGGGGCTAAGATAGCAGATAAGAAGCAAATTGATAGTTTAAAATTGGAATGGTCTTCTAGTAACAATGGTGTTGACTTCCAAATTGAATTAGACGTGCTCTGCAAGTTACAACCTCATGAAGACCTGAAATGGCTATCAATAAGATGTTATAAAGGAAACAAATTTCCAGACTGGGTGGGAAATTTTTCCTACCACAAGTTGACATTTTTAATGTTAATTGATTGTGACAACTGTTGTATGCTTCCTTCACTTGGGGAATTACCATCTCTCGAGCATCTCGAGATTTCACGTATGAAGTCAGTGAAGACTATTGATGCAGGTTTTTACAAGAATAATGATTGTTCTCTTGCTACACCCTTTCCCTCCCTTAAATTTCTAGTGTTTTCTTCGATGTCTTGTTGGGAGGTATGGAGTTCATTTGAATCGAACTCTTTTCCTGTGCTTCAGGAGCTTACAATACGGTACTGCCCCAAACTAAGCGGAGATTTGCCAAAGCACCTTCCTGCGCTAAAAACACTTGATATTGATTATTGCGAGCTTTTAGTCTCTTCTCTCCCAAGGGCTCCCTCCCTTCATAAATTGAGGATAAATAAAAGCAATAAAGTAGCACTCAATGTGTTTCCTCTTTTGGTGGAATCTATAGAAATTGAAGGAAGCCCGATGGTGGAGTCTATGATCGAGGCCATCACTAACATCCAACCAACTTGCATCCAATCTTTAACATTAAAGAATTGTTCGTCACCCATATCTTTCCCGGATGGTTGTCTACCTGCATCGCTGAACACTCTAGAAATCTACGATTTAAAAAACCTGGAATTCCCAATGCAACACAAACACGACTTACTAGGATCTCTTACAATATCCAATAGTTGTGATTCACTAACGTCTCTTCCATTGGTTTCTTTTCCGAATCTAAAAAATTTCAATATCTTAAGCTGTGAAAGTATGGAATCTCTTCTGGTTTCAGGGTCAGACTCATTTAGTAGCCTGAGATCTTTTACGATTTGCAATTGCCCCAACTTTGTGTCATTCCCGAGAGAAGGACTGTCTGCACCCAATTTGACTTGGTTCAAGGTTTCTGATTGCAAAAAGTTGAATTCGTTACCTGATCATATGAGTACTCTTCTTCCAAAGTTAGAACGTATTGAAATTGACAACTGTCCAGAAATTGAGGCATTTCCTGCAAAGTTAGATCCACCTAGCTTGAGAACAGTTTGGATTAGCAACTGTGAGAAATTACTAAGCGGCCCAGCATGGCCATCCATGCACATGCTTACATATCTTTCTGTCTGGGGTCCATGTGATGGCATCAAGTCCTTCCCAAATGAGGGTTTGCTGCCTCCCTCCCTTACAACTTTGCGTCTATTTAAGTTCTCAAGTTTGGAGACGTTGGACTGCAAAGGACTTCTCCACCTCACATCCCTACAACAATTAGAAATTGACCACTGTCAAAAGCTGAAGAATATGGCGGGAGAAAGGCTGCCTGTCTCCCTAATAAAGTTAAGCATAATGAAATGTCCTTTGCTGCAAAAACAATGCTGCAAGAAGCACCCTCAAATTTGGTCTAAAATTTTCCATATTCGTGGCATTAAGGTTGACCATAGATGGATTTTGTGA 3735 0.3834 MALAVVGGAFLSAFINVLFDKLASPEVVNFIRGKNPGKLLQAVNNKLLLVSHVFEDAEKRQITDPNVKKWLNVLKDLVYEVDDLLDEVSTKAATQKKVNKHFSPFINRKKIVSTSKLEDIVERLDDLLKQKLSLDLKEIPVEIEQWKAQPTSLEDGYGIYGREKDKEAIIKLLLEDNVHDEHVSVIPIVGMGGVGKTTLARSVYNDGNLNKEFDLHAWVCVSDKFDIVKVTKTLIEQVTHESCRLNDLDSLQLELMDKLKDKKFLIVLDDVWIKSNDNWRSLKKPFLSGIKGSKILMTTRNKNVVEKTSFHIVGVYPLDKLSNENCWLVFANHAFPPSESNENRSALEKIGREIVKKCDGLPLAAQSLGGMLRRKHAIRDWNNILHSDIWKLPENHCEIIPALRISYHYLPSHLKRCFVYCSLYPKDYIFKKNELILLWMAEDLLKAPENGKTLEEVGSEYFDDLVSTSFFQHYSSYNTFVMHDLMHDLTISLGGEFYSRSEELGKETKIDVKTRHLSFTKFSDPVTEHFQAFGSVKFLRTFLPVYLEDSPFNNEKATYIISSKLPYLRVLSFRGFDSLHVLPNSIGELIHLRYLNLSETRIQTLPESVCNLFNLQTLKLNCCFQLTKLPSDMQNLVNLRHLDIRGTHIEEMPRGIGKLNHLQQLHFFPVGKHKENSIKELGGLSNLHGWLLIKNLENVTNCNEALGAKIADKKQIDSLKLEWSSSNNGVDFQIELDVLCKLQPHEDLKWLSIRCYKGNKFPDWVGNFSYHKLTFLMLIDCDNCCMLPSLGELPSLEHLEISRMKSVKTIDAGFYKNNDCSLATPFPSLKFLVFSSMSCWEVWSSFESNSFPVLQELTIRYCPKLSGDLPKHLPALKTLDIDYCELLVSSLPRAPSLHKLRINKSNKVALNVFPLLVESIEIEGSPMVESMIEAITNIQPTCIQSLTLKNCSSPISFPDGCLPASLNTLEIYDLKNLEFPMQHKHDLLGSLTISNSCDSLTSLPLVSFPNLKNFNILSCESMESLLVSGSDSFSSLRSFTICNCPNFVSFPREGLSAPNLTWFKVSDCKKLNSLPDHMSTLLPKLERIEIDNCPEIEAFPAKLDPPSLRTVWISNCEKLLSGPAWPSMHMLTYLSVWGPCDGIKSFPNEGLLPPSLTTLRLFKFSSLETLDCKGLLHLTSLQQLEIDHCQKLKNMAGERLPVSLIKLSIMKCPLLQKQCCKKHPQIWSKIFHIRGIKVDHRWIL 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01971 1244 Gene3D - 144 313 IPR027417 -
Cca01g01971 1244 SUPERFAMILY L domain-like 481 901 - -
Cca01g01971 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 421 IPR027417 -
Cca01g01971 1244 Gene3D Ribonuclease Inhibitor 988 1233 IPR032675 -
Cca01g01971 1244 PRINTS Disease resistance protein signature 185 200 - -
Cca01g01971 1244 PRINTS Disease resistance protein signature 258 272 - -
Cca01g01971 1244 PRINTS Disease resistance protein signature 358 372 - -
Cca01g01971 1244 PRINTS Disease resistance protein signature 871 887 - -
Cca01g01971 1244 PANTHER DISEASE RESISTANCE PROTEIN RP 19 877 IPR044974 GO:0006952
Cca01g01971 1244 PANTHER DISEASE RESISTANCE PROTEIN RP 987 1194 IPR044974 GO:0006952
Cca01g01971 1244 PANTHER OS05G0414200 PROTEIN 19 877 - -
Cca01g01971 1244 PANTHER OS05G0414200 PROTEIN 987 1194 - -
Cca01g01971 1244 SMART LRR_typ_2 636 659 IPR003591 -
Cca01g01971 1244 SMART LRR_typ_2 589 612 IPR003591 -
Cca01g01971 1244 CDD AAA 160 271 - -
Cca01g01971 1244 Gene3D Ribonuclease Inhibitor 546 943 IPR032675 -
Cca01g01971 1244 Pfam NB-ARC domain 162 386 IPR002182 GO:0043531
Cca01g01971 1244 SUPERFAMILY L domain-like 937 1222 - -
Cca01g01971 1244 Gene3D - 406 492 IPR036388 -
Cca01g01971 1244 Pfam Rx N-terminal domain 10 100 IPR041118 -
Cca01g01971 1244 Gene3D - 320 405 IPR042197 -
Cca01g01971 1244 Gene3D - 15 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01971 Cca-Chr1 46017190 46023568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01971 573 667 WRKY Transcription Factor Family AT4G12020 34.375 4.39e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01971 - - vun:114165446 1626.3