Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01970 ATGGGAGGGTGTTGCAGTTGCCATGTTTCATTTGTAGGACAGGTGCATGATGTGGAATGTGAAGGTAACCATAGCAGTGATGTTGCATGTAAACGTGGTAGGGCCCGTGTCATGCTAAGAGGGTCCTCTGAGTTTGTGTCAATGTTCAGCCAAAAGGGTACGAAAGGAATTAATCAAGATGCATTGACAGTTTGGGAGGACTTCACTGGACAAAAGGATATGACCTTTTGTGGCGTGTTTGATGGTCATGGTCCTCTAGGACACAAGATTGCACAACGCATACGTGACAAACTACCCTCAAAAGTCTCAGCATCAATCAAACAGTCACAACAAAATTTCAGCCAACACCATGATGCTAATGTATCAGATGGAGGCACTGATAGCGAAATATATGTTGAGGATCAACAAAACATGTCCTTTGCTTCATGGGAGGAAAGCTTTATGAGGTGCTTCAAGGAAATGGACGAGGAGATTGAAAAGAACATTGACACTGATGGATTTCGTGGTGGTAGCACTGCTGTAACTCTAATCAAACAGGGTGACCAATTAATAATTGGCAATTTGGGAGATTCTCGTGCAGTTCTATGCAGAAGAGCACATGACAACAATCTTATTCCTGTTCAACTTACTGTTGACTTTACCCCAGATGTTCCAAGTGAAGCTTTAAGAATCATTAATTGTCGAGGTAGAATTTTTGCTGCTAAAGAAGATCCAAGCGTAAATAGAGTATGGATGTCTGAAGGGAGCTTCCCAGGACTGGCTATGGCAAGAGCCTTTGGAGATTTCTGCCTTAAAGACTATGGTGTCATCTCAGTACCTGATGTATCTTACAGAAAACTTACCAGACAAGATGAATTTGTGGTTTTGGCTTCTGATGGGATATGGGATGTGCTAACAAACAGTGAAGTAATAAACATAGTTGCTTCAGCTCCAAAAAGGTCCATGGCAGCCAAATTGTTAGTAAATCATGCTGTTCAGGCTTGGAGACACAAGTATGGTTTCAAGGTTGATGATTGTACAGCCTTATGTTTGTTCCTGAAGGATTAG 1047 0.4193 MGGCCSCHVSFVGQVHDVECEGNHSSDVACKRGRARVMLRGSSEFVSMFSQKGTKGINQDALTVWEDFTGQKDMTFCGVFDGHGPLGHKIAQRIRDKLPSKVSASIKQSQQNFSQHHDANVSDGGTDSEIYVEDQQNMSFASWEESFMRCFKEMDEEIEKNIDTDGFRGGSTAVTLIKQGDQLIIGNLGDSRAVLCRRAHDNNLIPVQLTVDFTPDVPSEALRIINCRGRIFAAKEDPSVNRVWMSEGSFPGLAMARAFGDFCLKDYGVISVPDVSYRKLTRQDEFVVLASDGIWDVLTNSEVINIVASAPKRSMAAKLLVNHAVQAWRHKYGFKVDDCTALCLFLKD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01970 348 SMART PP2C_4 35 344 IPR001932 -
Cca01g01970 348 Pfam Protein phosphatase 2C 69 326 IPR001932 -
Cca01g01970 348 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 348 - -
Cca01g01970 348 CDD PP2Cc 45 346 IPR001932 -
Cca01g01970 348 PANTHER ALPHABET, ISOFORM E-RELATED 1 348 - -
Cca01g01970 348 Gene3D - 40 348 IPR036457 -
Cca01g01970 348 SUPERFAMILY PP2C-like 43 347 IPR036457 -
Cca01g01970 348 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01970 Cca-Chr1 45998122 46000788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01970 36 348 PP2C-type Phosphatase Gene Family AT1G16220 47.222 4.87e-110 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01970 - - vra:106755106 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01970 01 45998122 46000788 Cca01g01970 01 45998122 46000788 ECH