Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01959 ATGGGACACAACAGTTGTCATGTCAAAGATTTCCACACAGACCCACTTCAGCTTAGCCTCTCTTTTGCTTCAAATGGTGATAGGATGAGGAAATGGAGGAACAGTCACAAAGGTGGTACTGGTTTCATTTACTTAGCCTCTTTTCTGTTTCTTTTGCAAGCTTTGGTTTCCACCATTCAACCTGTTTCAGGCGACTTGTGGGATGGGGTGGTTGTGACTCAAGCTGATTTCAGTGCTCTGAGGGCTATTAAGAATGAGCTTGTTGACTCCAAAGGGGTTCTGAGGAGTTGGAATGACAGTGGTATAGGTGCTTGTTCAGGAGGATGGGCAGGAATCAAGTGTGTGAATGGAGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGCCGAATCTCACAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTCCATGACAATGCTCTTGCTGGTCCAATTCCTTTGTCACTTGGCCTCCTTCCTAACCTCAGAGGAGTTTATCTCTTCAATAACAAGCTTACAGGTTCTATCCCTCCTACCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATGTCCTCACTGGTAAAATCCCTTCCACTTTAGCAAACTCCACTAGGATATTTAGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTGACCATGTCTCCTTCTCTAACTATTCTTTCCCTCCAACACAACAATCTCTCTGGTTCCATCCCAGATTCTTGGGGTGGAACTGAAAAGAGGAAAGCTTCCCAGCTTCAGGTTTTGACCCTTGATCATAATCTCATTTCTGGAACCATCCCAGCATCTCTAGCCAAGCTAGCTTTACTTGAAAATGTTTCCTTGAGTCATAACCAGATTGTAGGGCCTATTCCAAGTGAACTAGGTGCACTTTCCAGGCTTCAAATTCTTGATCTGTCAAAAAATGCCATCAATGGCAGCCTTCCCGCTAGCTTCTCTAACCTCTCTTCTCTTATTTCATTAAATCTTGAGAGTAACCAACTTGAAAACCATATTCCAGATTCTTTGGACAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGCCAAATCCCACCAACAATTGGCAACATATCAAGCATTAGTCAAATTGATTTCTCTGAGAACAAATTAGTTGGAGAAATTCCAGATTCCCTTACCAAACTTGCAAATCTCAGTTCATTCAATGTCTCTTACAATAACCTATCTGGTTCTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTAGCTCTTTCGTTGGAAACCTTGAGTTATGTGGGTACATCAGTTCAAAACCATGCACTTCACCCCCACCTCACAATCTTCCAGCTCAATCACCACAACCTCCTTCCAAGCCACATCATCGCAAATTAAGCACCAAGGACATAATCCTCATAGTAGCAGGTGTTCTCCTGTTGATTCTGTTATCACTGTGCTGCTTTTTGCTGTGTTGTTTGATCAGGAGAAGAACTGCTTCAAGCAGAAAGAGCAGCAAGACTGCCAAGGCTGCAGCATCTGCTAGGAGTGTTGAGAAAGGTGCCTCAGCTGGTGGTGAGGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGACGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCGTATGGAACAGCATACAAAGCAACACTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAGACTACTAAAGGGCAGAAAGAGTTCGAAACCGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCTTAGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACCAAAGGAAGCCTAGCATCGTTCCTCCACGCTCGTGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAGCCATTGGAGTCACTCGCGGCTTGTGCTACCTCCATAGCCAGGAGAACATTGTACATGGGAACCTTACGTCTAGCAACATACTATTGGATGAGCAAACAGAAGCCCATATAACAGATTTTGGTCTCTCAAGGCTAATGACAGCTTCTGCCAACACCAACATCATTGCCACTGCAGGAAGTCTTGGCTACAATGCACCAGAGCTTTCAAAGACCAAGAAGCCTAACACAAAGACTGATGTGTACAGCCTTGGTGTCATCATGTTGGAGCTCCTAACTGGAAAACCACCTGGGGAGCCAACCAATGGCATGGAGTTGCCCCAATGGGTGGCATCCATAGTGAAGGAAGAGTGGACCAATGAAGTGTTTGATTTGGAGCTCATGAGGGATGCACCAGCCATAGGGGATGAATTGCTCAATACATTGAAGTTAGCATTGCATTGTGTGGATCCATCTCCAGCTGCTAGGCCAGAAGTTCAGCAAGTTCTACAGCAGTTGGAGGAGATCAAACCAGACTTGGCTTCAGGGGATGATGGAGCTAGTAAGGTCCAAACAACTGAGTAA 2568 0.4459 MGHNSCHVKDFHTDPLQLSLSFASNGDRMRKWRNSHKGGTGFIYLASFLFLLQALVSTIQPVSGDLWDGVVVTQADFSALRAIKNELVDSKGVLRSWNDSGIGACSGGWAGIKCVNGEVIAIQLPWRGLGGRISQKIGQLQSLRKLSLHDNALAGPIPLSLGLLPNLRGVYLFNNKLTGSIPPTLGNCPMLQSLDISNNVLTGKIPSTLANSTRIFRINLSFNSLSGSIPSSLTMSPSLTILSLQHNNLSGSIPDSWGGTEKRKASQLQVLTLDHNLISGTIPASLAKLALLENVSLSHNQIVGPIPSELGALSRLQILDLSKNAINGSLPASFSNLSSLISLNLESNQLENHIPDSLDRLHNLSVLNLKNNKLDGQIPPTIGNISSISQIDFSENKLVGEIPDSLTKLANLSSFNVSYNNLSGSVPSLLSKRFNASSFVGNLELCGYISSKPCTSPPPHNLPAQSPQPPSKPHHRKLSTKDIILIVAGVLLLILLSLCCFLLCCLIRRRTASSRKSSKTAKAAASARSVEKGASAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIAIGVTRGLCYLHSQENIVHGNLTSSNILLDEQTEAHITDFGLSRLMTASANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIMLELLTGKPPGEPTNGMELPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPDLASGDDGASKVQTTE 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01959 855 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 28 845 - -
Cca01g01959 855 Gene3D Ribonuclease Inhibitor 263 454 IPR032675 -
Cca01g01959 855 Gene3D Ribonuclease Inhibitor 72 262 IPR032675 -
Cca01g01959 855 Pfam Protein tyrosine and serine/threonine kinase 570 834 IPR001245 GO:0004672|GO:0006468
Cca01g01959 855 ProSiteProfiles Protein kinase domain profile. 566 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01959 855 CDD STKc_IRAK 572 837 - -
Cca01g01959 855 Pfam Leucine Rich Repeat 191 210 IPR001611 GO:0005515
Cca01g01959 855 Gene3D Transferase(Phosphotransferase) domain 1 644 850 - -
Cca01g01959 855 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 28 845 - -
Cca01g01959 855 Pfam Leucine rich repeat N-terminal domain 75 114 IPR013210 -
Cca01g01959 855 SUPERFAMILY L domain-like 113 448 - -
Cca01g01959 855 Gene3D Phosphorylase Kinase; domain 1 572 643 - -
Cca01g01959 855 SMART LRR_typ_2 337 360 IPR003591 -
Cca01g01959 855 SMART LRR_typ_2 361 385 IPR003591 -
Cca01g01959 855 SMART LRR_typ_2 237 259 IPR003591 -
Cca01g01959 855 SMART LRR_typ_2 409 432 IPR003591 -
Cca01g01959 855 SMART LRR_typ_2 164 188 IPR003591 -
Cca01g01959 855 SMART LRR_typ_2 313 336 IPR003591 -
Cca01g01959 855 SUPERFAMILY Protein kinase-like (PK-like) 570 839 IPR011009 -
Cca01g01959 855 Pfam Leucine rich repeat 314 374 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01959 Cca-Chr1 45831415 45835433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01959 67 839 Receptor kinase-like Gene Family AT3G51740 68.895 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca01g01959 PK_Tyr_Ser-Thr 5.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01959 - - gmx:100799290 1402.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01638 05 35824547 35827315 Cca01g01959 01 45831415 45835433 ECH
Cca01g01959 01 45831415 45835433 Cca01g01959 01 45831415 45835433 ECH