Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01955 ATGTTGTGTATTTTATCAGtaaagGAAAGTTCTGAGAAGAAGAAACATATTGTGACAACACTACCTTTTTGTCCTTCCTTCTACAATAACAGGGCAGGACATTTTCTGCACGAAAGTTTTGATAAGAAGAAATATATTGTGACAACACTAGCTTTTTATCCTTCCTTCTACAATAACAGGGCAGGACATTTTCTGCACGTAAGAAATGCCATTTGGACCTTTTGTGCCTTCCTCACAATAACAGGGCATTTTCTGCATGAAAATTTTGATAAGAAGAAACATATTGTGACAACACTACGTTTTTGTCCTTCCCTCTACAATAACAGGGCAGGGCATTTTCTGCACGAAAGTTTTGATAATAAGAAACATATTGTGACAACACTACGTTTTTGTCTTTCCTTCTACAATAACAGGGCAGGGCATTTTCTGCACGAAAGTTTTGATAAGAAGAAATATATTGTGACAGCAATACCTTTTTGTCCTTCCTTCTACAATAACAGGGCAGGGCATTTTCTGCACGAAAGTTTTGATAAGAAGAAACATATTTTGACAACAATACCTTTTTCTCCTTCGTTCTACAATAACAGGGAAGGGCATTTTCTGCATGTAAGAAATGCCATCTGGACCTTTTGTGCCTTCCTCACAATAACATGGCATTTTCTGCACGTCAGAAATGGTAGAGATTTAGGTTGTGTATTATTATCaataaagAATAACAGGGCAGGACATTTTCTGCACGTAAGAAATGCCATCTGGACCTTTTGGGCCTTCCTCACAATAACAAGACATTTTCTGCACGAAATTTTTGATAAGAAGAAACATATTGTGACAACACTACCATTTTGTCCTTCCTTCTACAATAACAGGGTAGGGCATTTTCTGCACGAAAGTTTTTATAAGAAGAAACATATTGTGACAACACTACCTTTTTGTCCTTCCTTCTACAATAACAGGGCAAGACATTTTCTACACGTAAGAAATGCCATCTGGACTTTTTGTGCCTTCCTCACAATAATAGGGCATTTTCTGCACGTAAGAAATGGTAGAGATTTAGGTTGTGTATTGTTATCAATAAAGGAAACTTTTGATAAGAAGAAACATATTGTAACAACACTACCTTTTTGTCCTTCCTTCTACAACAACAGGGCAGGGCATCTTCTGTATGAATGTTTTGATAAGAGGAAACATATTGTGACAACACTACCTTTTTGTCCTTCCTTCTACAATAACAGGGCAGGGCATTTTCTGCATGTAAGAAATGCCATCTGGACTTTTTGTGCCTTCCTCACAATAACAGGACATTTTCTGCACGGCAGGGCATTTTCTGCATGTAAGAAATGCCATCTGGACTTTTTGTGCCTTCCTCACAATAACAGGGCATTTTCTGCACGGAAGATTATACCCGCGTTGAGCCCCGAGAAGCACGCCTTCTTCTTCGTTAAGGCCTTTGTTGCGGGTGTGATATTAGCCACTGGCTTCATTCACGTTCTACCTGATGCCTTTGAAAACTTAAATTGCCCTTGTTTGAAAGAGCATCCATGGGGCGATTTTCATTTCACTGGCTTCGTGGCCATGTGCACTGCCATGGGGACCCTCATGGTTGACACTTATGCCACTACTTATTTTCAAAAGCAACACTTCAAAGGGACACCAATTGTGAAGGAGGTCACTGATGTCGAGATGGAACATGGCCATGAAGGAAATGTACATCTTCACACACAAGCAACTCATGGTCATGCACATGGTGTTGGAGCTTGGAATTATAAAGTTCACTCTGTCATCATTGGAATTTCTCTGGGAGTTTCAGAGAGTCCCAAAACAATGAGACCACTGGTAGCTGCGTTGACTTTTCATCAGTTCTTTGAGGGCATGGGACTTGGAAGTTGTATATCTCAGGCAAATTTCAAGAAGCTATCTGTGACAATAATGGGATTGTTCTTTGCTTTAACAAATCCTGTGGGGATTGGAATAGGGATCACTAATATTTACGATGAAAGCAGCCCAACTGCCTTAATTGTGGAAGGAATCTTCAATGCAGCATCTTCAGGGATCTTAATCTATATATGGCTCTTGTTGATCTTCTTGCAGCTGATTTTATGA 2100 0.3938 MLCILSVKESSEKKKHIVTTLPFCPSFYNNRAGHFLHESFDKKKYIVTTLAFYPSFYNNRAGHFLHVRNAIWTFCAFLTITGHFLHENFDKKKHIVTTLRFCPSLYNNRAGHFLHESFDNKKHIVTTLRFCLSFYNNRAGHFLHESFDKKKYIVTAIPFCPSFYNNRAGHFLHESFDKKKHILTTIPFSPSFYNNREGHFLHVRNAIWTFCAFLTITWHFLHVRNGRDLGCVLLSIKNNRAGHFLHVRNAIWTFWAFLTITRHFLHEIFDKKKHIVTTLPFCPSFYNNRVGHFLHESFYKKKHIVTTLPFCPSFYNNRARHFLHVRNAIWTFCAFLTIIGHFLHVRNGRDLGCVLLSIKETFDKKKHIVTTLPFCPSFYNNRAGHLLYECFDKRKHIVTTLPFCPSFYNNRAGHFLHVRNAIWTFCAFLTITGHFLHGRAFSACKKCHLDFLCLPHNNRAFSARKIIPALSPEKHAFFFVKAFVAGVILATGFIHVLPDAFENLNCPCLKEHPWGDFHFTGFVAMCTAMGTLMVDTYATTYFQKQHFKGTPIVKEVTDVEMEHGHEGNVHLHTQATHGHAHGVGAWNYKVHSVIIGISLGVSESPKTMRPLVAALTFHQFFEGMGLGSCISQANFKKLSVTIMGLFFALTNPVGIGIGITNIYDESSPTALIVEGIFNAASSGILIYIWLLLIFLQLIL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01955 699 TIGRFAM zip: ZIP zinc/iron transport family 465 690 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cca01g01955 699 Pfam ZIP Zinc transporter 460 689 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cca01g01955 699 PANTHER ZINC TRANSPORTER 1 465 690 - -
Cca01g01955 699 PANTHER ZINC/IRON TRANSPORTER 465 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01955 Cca-Chr1 45759404 45768671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01955 465 691 Inorganic Solute Cotransporters AT3G12750 54.321 1.87e-78 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01955 K14709 - gmx:547695 324.709