Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01954 ATGGCACATTCTTCTTCAGGATCTTCTCAAATAAAACATGTTCTCTCTCTTTGTCTCCTACTTATTTCGGGATTGTCAGGGTGTGCATCAAAGCAAATGTCAGATAGCATTCCTCAAATAAAGTATGACGTTTTTGTTAACTTTAGGGGCGAGGACGTTCGTCGCGGTTTTCTTGGTTATTTGACTGAGTCTTTTCATCAAAAGCAAATATCTGCCTTTGTAGATACTAAACTTGAGAAGGGGGATGAAATATGGCCTTCAATTGTTAGAGCAATTCAAGGATCATTGATTTCGTTGATTATATTCTCTAGAAACTATTCCTCTTCACGTTGGTGTTTGGAAGAACTTGTGAAAATACTTGAGTGCAGGGAGAAATACAACCAAACTGTAATACCTGTTTTCTACCATGTAAATCCCACATATGTACGACATCAAAAGGGGACTTATGGAAAAGCTCTTGATGAACATGAAAAGAAATATAATTTGACCTCAGTGCAAAACTGGAGACATGCTTTGAAGAAGGCTGGCAATATATCGGGAATAAAGTCCTTCGATTACAAgacagaagttgagctccttggagaaatcatcaatattgttaatcttgtgttgatgagtttggataagcacccatttaacttaaaaggacttgtgggagtcgacaaaccaattcaacatttggaatcattgttataccaagagtcaaaatatgtccgtgtcattggaatttggggtatgggtggtattggaaagacaactattgccgaagaaatatttaagaaattatattccgaatatgatcggtattattttctggcagatgtagatgaagaatcaataagacatggaacaatttatttgaaggaaaaccttttctctgcactacttgaagaaaaagtgaaaatcaacatagtgcatggattgtcaaattatattaagagaaagatcagtcgtatgaaggttttaatcgttcttgatcatgtgaatgattcaaatctgctagaaaaattgtttggaagccatgattggtttggacgaggcagtagaatcattataacaaccagagataaacaagttcttattgctaataaagttgatgatatatatcatgttggggcattgaactctggtgaagcacatgaaatttttactttgtatgcctttaaccaaaatcattttgatatggagtattacaagctatcaaagagggtggtcaattattctcaaggcattccattagttcttaaagttttgggacatcttctttgtgggaaagataaggaagtatgggagagtcaactagacaaactaaaaaacatgccaaatagagatatttacaatacaatgagattaagttatgatgatctagaccgcaaagaacaaaagattcttttggatcttgcatgtttttttatgggattgaatttgaaagtggaccgcataaaagttttattgaaagatagtgaaagagatgtttcggtagttgctggattagaaaggttgaaagataaagctcttataaccatttctgaagataatgttatatccatgcacgatatcatacaagaaatggcttgggagattattcgtcatgaatccattgaagagcctggaaaccgtagccgattgagtgatcctcatgatatttatgaagtattgaaatataacaagggaactgaggccataagaagcataagggcagatttgtcagtaattaggaagctgcagttaagccctcacgtatttactaagatgagtaaactacagtttttgtattttcctagtaaatataatcaagatggcttttctcttcttcctcacgggcttgaatcttttccagttgagctaagatatcttggttggatgcgttaccctctgaaatccttgccagagaatttttctgctgaaaaccttgttatattggatttgtcatatagccaagtggagaaactttggaatggagtgcagaatttgatgaatttgaaagaaattaaagtctctggttctgaaaatttgaaggagctgccagacctttcaaaagccacaaatcttgaagtgctagatatcaaattttgtcctctgttgactaaagtggctccatctattctctcactcaacaagcttgagagattgtatctagctttttgttcccttactaaaatttcaagcgagaaccacctaaggtcccttagttatctcaatcttcaatcatgcaaaaaactaagggaattttcagtgacatcagagaacatgattgaacttgatttatcatcaactcgtgtcaatgccttgccctcatcttttggaaatcaaaggaagctcgaaatcctgtggctaagagacagtggcatcgagtgttttccttcaagcttcaagaatctttcaagactgcgacatctgaatgtatataattccaaggagcttcatactctaacagaacttcccccatcccttgaaattctagatgccacagattgcacatcattgaagtctgtgccatcaatttctgaacagttcaatgaaaacaggagagaggttctattttggaattgcttgaaattggatgaacattctctcaaggctattgtgttcaatgcacacattaatgtgatgaaatttgcatatcaacatttatctgcacctgatcaaaattccgatgattacgatcatacttatgaatctgatcaagtaaagtatgtgtatccaggaagtagtgttccacagtggatggagtataaaacaacaaaggattatataattattgatctctcttctactccacactcctctcagttaggcttcatttttggctttgttatctctggtcctatggtgaaggcaataattggttatagatttacgttttatatcactgtgaatgatgatgaggatgaaagtaaaaagaatactatcgacataaacatgtctgactcaattgtttgggttgcatcggatcatgtgtgtttgatttatgaccaaagatgttctcactacctaaacagtaaagccaaaaatcaaacaaggtttaaaatcaaggttgaagcgatggcagctgcggtagctcatcaacgggacgtggggttaaaagggtttggagtcagcctaataaacaccatagcatataacaatttcattcaagaaatgAACACCTTATCAGATCATAGTTTCATTCAAGAAATAAACTCCTCAGCAGATCGTAGTTTCATTCATCAAGTAAACACCTCAACAGATCACAGTTTCGTTCAAGAAATAAACACCTCAGCAGATCACAGTTTCAATGTTCAACAAATGGAA 3294 0.0798 MAHSSSGSSQIKHVLSLCLLLISGLSGCASKQMSDSIPQIKYDVFVNFRGEDVRRGFLGYLTESFHQKQISAFVDTKLEKGDEIWPSIVRAIQGSLISLIIFSRNYSSSRWCLEELVKILECREKYNQTVIPVFYHVNPTYVRHQKGTYGKALDEHEKKYNLTSVQNWRHALKKAGNISGIKSFDYKTEVELLGEIINIVNLVLMSLDKHPFNLKGLVGVDKPIQHLESLLYQESKYVRVIGIWGMGGIGKTTIAEEIFKKLYSEYDRYYFLADVDEESIRHGTIYLKENLFSALLEEKVKINIVHGLSNYIKRKISRMKVLIVLDHVNDSNLLEKLFGSHDWFGRGSRIIITTRDKQVLIANKVDDIYHVGALNSGEAHEIFTLYAFNQNHFDMEYYKLSKRVVNYSQGIPLVLKVLGHLLCGKDKEVWESQLDKLKNMPNRDIYNTMRLSYDDLDRKEQKILLDLACFFMGLNLKVDRIKVLLKDSERDVSVVAGLERLKDKALITISEDNVISMHDIIQEMAWEIIRHESIEEPGNRSRLSDPHDIYEVLKYNKGTEAIRSIRADLSVIRKLQLSPHVFTKMSKLQFLYFPSKYNQDGFSLLPHGLESFPVELRYLGWMRYPLKSLPENFSAENLVILDLSYSQVEKLWNGVQNLMNLKEIKVSGSENLKELPDLSKATNLEVLDIKFCPLLTKVAPSILSLNKLERLYLAFCSLTKISSENHLRSLSYLNLQSCKKLREFSVTSENMIELDLSSTRVNALPSSFGNQRKLEILWLRDSGIECFPSSFKNLSRLRHLNVYNSKELHTLTELPPSLEILDATDCTSLKSVPSISEQFNENRREVLFWNCLKLDEHSLKAIVFNAHINVMKFAYQHLSAPDQNSDDYDHTYESDQVKYVYPGSSVPQWMEYKTTKDYIIIDLSSTPHSSQLGFIFGFVISGPMVKAIIGYRFTFYITVNDDEDESKKNTIDINMSDSIVWVASDHVCLIYDQRCSHYLNSKAKNQTRFKIKVEAMAAAVAHQRDVGLKGFGVSLINTIAYNNFIQEMNTLSDHSFIQEINSSADRSFIHQVNTSTDHSFVQEINTSADHSFNVQQME 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01954 1098 Gene3D - 373 457 IPR042197 -
Cca01g01954 1098 SUPERFAMILY "Winged helix" DNA-binding domain 444 554 IPR036390 -
Cca01g01954 1098 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 37 1051 IPR044974 GO:0006952
Cca01g01954 1098 PRINTS Disease resistance protein signature 725 741 - -
Cca01g01954 1098 PRINTS Disease resistance protein signature 315 329 - -
Cca01g01954 1098 PRINTS Disease resistance protein signature 408 422 - -
Cca01g01954 1098 PRINTS Disease resistance protein signature 240 255 - -
Cca01g01954 1098 ProSiteProfiles TIR domain profile. 40 204 IPR000157 GO:0007165
Cca01g01954 1098 Pfam NB-ARC domain 227 447 IPR002182 GO:0043531
Cca01g01954 1098 Pfam Leucine Rich Repeat 637 656 IPR011713 -
Cca01g01954 1098 Gene3D Ribonuclease Inhibitor 551 749 IPR032675 -
Cca01g01954 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 467 IPR027417 -
Cca01g01954 1098 Pfam TIR domain 41 188 IPR000157 GO:0007165
Cca01g01954 1098 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 180 IPR035897 -
Cca01g01954 1098 SMART till_3 41 178 IPR000157 GO:0007165
Cca01g01954 1098 Gene3D - 207 368 IPR027417 -
Cca01g01954 1098 Gene3D - 39 206 IPR035897 -
Cca01g01954 1098 SUPERFAMILY L domain-like 567 857 - -
Cca01g01954 1098 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 37 1051 - -
Cca01g01954 1098 Gene3D Ribonuclease Inhibitor 750 898 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01954 Cca-Chr1 45721400 45751354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01954 42 834 WRKY Transcription Factor Family AT4G12020 34.275 1.59e-98 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01954 - - gmx:100796110 1679.46