Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01947 ATGACActctctccctttctatttctctttctccttctaagcttctgctttttcttcactccggcgctttctctctcCTCCGACGGCCTCGCCCTTCTCGCTCTTAAATCCGCCGTCGACCAACCCTCCGCCGCCTTCTCCGACTGGAACAACGGCGACCCCACGCCCTGCGCCTGGTCCGGAGTATCCTGCGCCAACATCTCCGGCCAGCCGGAGTCCCGCGTCGTCGGACTCTCCCTCGCCGGAAAATCCCTCTCCGGCTACCTCCCCTCGGAGCTCGGCACGCTCCGCTTCCTCCGCCGCCTCAACCTCCACGACAACGCCTTCTCCGGCGTCCTTCCGCCGCAGCTCGCCAACGCCACCGCGCTCCACAGCCTCTTCCTCCACCGCAACAACCTCTCCGGCCCCCTCCCCGCCGCCCTCTGCGCCCTCCCGCGCCTCCAGAACCTCGACCTCTCCGACAACGCCTTCTCCGGCCACATCCCCGACGACCTCAAAAACTGCAAGAATCTGCAGCACCTAATCCTCGCCGGAAACAAATTCTCGGGCGAAATCCCCGCCGGCGTGTGGCCGGAGCTGCAGAACCTCCTTCAGCTCGACCTCTCCGCGAACGAGTTCACAGGCTCCATCCCTAACGACCTCGGAACCCTAATTTCCCTCTCCGGCACGCTGAACCTCTCGTTCAACCACCTCTCCGGTAGGGTTCCGGCTTCATTAGGAAAATTACCGGCCACAGTTAGCTTCGACCTCAGAAACAATAACCTCAGCGGCGAAATCCCCCAAACGGGGTCGTTTTCAAACCAAGGCCCCACCGCGTTCCTTGGAAACCCTAACTTATGCGGGTTTCCGCTTAGAAAATCATGTTCCGGTTCGAACCGTGGTTTTTCACCCGGTTCGGACCGGAACCAACCGGTTAACCGGTCTAAGGGGTTGAGTCCCGGTTTGATTATTTTGATCTCAGTGGCTGATGCTGCTGTAGTGGCCCTCATTGGGCTTGTGATTGTTTATGTTTATTGGAAGAAAAAGGATGATGAGAATGCATGTAGTTGCATTAGGAAGAGGAGTTTCGGTGAAGAGAAAGGGGGTGCGTGTGTGTGTGGTGGGTTTTCATGTGTGAGTGGTTtgaggagtgaagatgatgacgatgatgatgaggtgaagggtgagggtgagggtgaaggggaattggtgaggATTGATAAGGGTTTGAGTTTTGAACTTGATGAACTGTTGAGGGCTTCGGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATAGTGTATAAGGTGGTGTTGGGGAATGGGGTGCCTGTGGCTGTGAGGAGGTTGGGGGAGGGTGGGGAAGAGAGGTATAAGGAGTTTGCTGCGGAGGTTCAGGCCATTGGGAAGGTCAAGCACCCTAATGTTGTGAGGTTGAGGGCTTACTATTGGGCGCATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAACTTGGCACATGCCCTTAGAGGGAGAAATGGCCAACCATCAACAAATCTTTCATGGTCCACCAGACTGAGAATTGCCAAAGGAACAGCAAGAGGCCTGGCCTATCTCCACGAATGCAGTCCAAGAAAATTCGTCCACGGTGACATCAAACCCTCTAACATCCTACTAGACAACGACTTTCACCCCTACATTTCTGATTTTGGCCTAAACCGTCTCATAAGCATCACTGGTAACAACCCCTCCACCGGTGGATTCATGGGTGGAGCCCTTCCTTACATGAAGTCATCACAGAAAGAGAGAACCAACAACTACAAAGCCCCCGAGGCTCGTGTCCCTGGCTGCAGACCCACCCAGAAATGGGACGTGTACTCATTCGGCGTTGTGTTGCTTGAAATACTAACTGGGAGGTCACCAGAATCGTCTCCCACGACATCAACTTCTATGGAAGTCCCTGACTTGGTGAGGTGGGTGAGGAAAGGATTCGATCAAGAAAGCCCTTTATCTGAAATGGTGGATCCATCATTGCTCCAAGAAGTGCGCGTTAAGAAAGAGGTGCTGGCTGTGTTTCATGTAGCACTGGCTTGCACAGAGGGAGACCCTGAGGCCCGGCCTAGGATGAAAACTGTCTCTGAAAATCTTGACAAGATTGGAACGTAA 2130 0.5089 MTLSPFLFLFLLLSFCFFFTPALSLSSDGLALLALKSAVDQPSAAFSDWNNGDPTPCAWSGVSCANISGQPESRVVGLSLAGKSLSGYLPSELGTLRFLRRLNLHDNAFSGVLPPQLANATALHSLFLHRNNLSGPLPAALCALPRLQNLDLSDNAFSGHIPDDLKNCKNLQHLILAGNKFSGEIPAGVWPELQNLLQLDLSANEFTGSIPNDLGTLISLSGTLNLSFNHLSGRVPASLGKLPATVSFDLRNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKSCSGSNRGFSPGSDRNQPVNRSKGLSPGLIILISVADAAVVALIGLVIVYVYWKKKDDENACSCIRKRSFGEEKGGACVCGGFSCVSGLRSEDDDDDDEVKGEGEGEGELVRIDKGLSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEERYKEFAAEVQAIGKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLAHALRGRNGQPSTNLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFHPYISDFGLNRLISITGNNPSTGGFMGGALPYMKSSQKERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEARPRMKTVSENLDKIGT 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01947 709 SUPERFAMILY L domain-like 26 285 - -
Cca01g01947 709 Gene3D Ribonuclease Inhibitor 191 290 IPR032675 -
Cca01g01947 709 Pfam DNA binding protein S1FA 307 342 IPR006779 GO:0003677|GO:0005634|GO:0006355
Cca01g01947 709 ProSiteProfiles Protein kinase domain profile. 412 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01947 709 Pfam Leucine rich repeat 99 156 IPR001611 GO:0005515
Cca01g01947 709 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 709 - -
Cca01g01947 709 SMART serkin_6 416 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01947 709 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cca01g01947 709 Gene3D Phosphorylase Kinase; domain 1 404 487 - -
Cca01g01947 709 SUPERFAMILY Protein kinase-like (PK-like) 417 703 IPR011009 -
Cca01g01947 709 Gene3D Ribonuclease Inhibitor 25 190 IPR032675 -
Cca01g01947 709 Pfam Protein kinase domain 417 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01947 709 Gene3D Transferase(Phosphotransferase) domain 1 488 709 - -
Cca01g01947 709 CDD STKc_IRAK 418 707 - -
Cca01g01947 709 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 7 709 - -
Cca01g01947 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01947 Cca-Chr1 45501377 45505365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01947 20 707 Receptor kinase-like Gene Family AT1G67510 68.688 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca01g01947 Pkinase 1.2e-32 CL0016
TF S1Fa-like Cca01g01947 Pkinase 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01947 - - var:108346287 1228.39