Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01932 ATGATGCACCCTGAGATTCTAGAATCCCCATCATGCTCATCATCATTCTACCAAGCCAATACCTCAACCATTGATCTTCAATTTGAGCACCATGGCTTCTTAGTGGATCCTTCTGAATTCAATTCCCTTTTCAACACTCTAGAGGACACTTCCTCTGAAGCTTCCTCACTTTCTTTACCTTCCATCATGTTCACCAATGACAATTTTGTCCATTACCCAATTGAGAAAGACATTTTTCAACTTCCAACATTGATGGATGAGTATGACTATGATTTGTCAATGGATTTTGATGAATTTGATCATATGCTAAGGGATGATCATCATAAAAGTGAGGTAGAAGATACTACTATTACTTGGAGTCCTACCTCATCTTTGAACTCAGATTTGTCATCAAACCAAAAACCACTTACCTTGCCTCATCAAGGCATGGAAATTGAAAACCAAGTGAGTCTTCCACACATGTTGGAGGCTCTCGGAGAAGCCATATTTCAAGGGGAGAAGCCACTAGCAAAAGTGATCATGAGATGCATCATGCAGAAAGTTAGTCCAATTTCTGAACCCCTTGAACGCCTTGCATTCTATTTGTGCCAAGACATGATGAAAACAAGCCAAGGGGATTGTTGTTACCTCACACAAGAGGCTTCCAAGAACTTTGAGGCAACTTTTAAGGCTTTCTACCAAGGCCTCCCACATGGGAAATTTGCTCACTTTGTGGCTAATTTGGCCATTATTGAAGCCTTGCCACATGATTGTGAAGTCATACACATAGTGGATTTTGACATGGGAGAAGGGTCTCAATGGCCTCCGTTGATTGAGGCCATTGCAACCCTTCACAAGACATTGAAGTTGACATCAATAAAATGGGGAGAGGAGAGTTCTGAGGGTGTTTGTGTTTCTTCTCCATGGAGGTTTGAGGGAATTAGAAGGGATCTCTATGAGCATGCTAGATCTTGTGGGGTGAAGTTGGTGGTGGAGGGGAAGGGAATAGAGGAAGTGGTTAGTGAGCTTAAGAAAATGAACAAAAGGGGTGGAAGGAGAGAATTTTTGGCCTTCAATTGCATGGTGGATCTTCCACACATGGGGAGAGGGAGGAGTAGAAAGCATGTCATGGAGTTTCTAGATTTGATCAAGAGTTGTGGTTGCAAGGGAGTTGTCACTTTTGGGGATGGGAGAGTTTGTGAGGAATTGGAAAATGATGACTTGGAATTCAGGTCATTCTTTGAGAGGCATTTGGTGCATTACAAGGCATTGTTAGAGTCAGTTGAATCACATTTCCCAAATCAATTCTTAGATGCAAGAACTGCCATGGAGTGCCTATTTGTGGCACCTTATGTCTCTTCTCTTGCTTGGTTGCAAAAGTGGGAGGAGATCATAGAGGATTCCTATTTTAAGACAGAGATTGGCTTAGAAGGTTGTGGATTGAGCAATGCAATTTTAATGGAAGTCAAAGAGATGTTAAATGGATGTGAAGAAGGGTTATTATATCAGGCTAGGATTGAAGGAAAGAATTGTGACAATCAATTGATTTTGGAATGGAAAGGAATCCAGCTAGTAAGAGTTTCAATTTGGAGAAATTAA 1578 0.4125 MMHPEILESPSCSSSFYQANTSTIDLQFEHHGFLVDPSEFNSLFNTLEDTSSEASSLSLPSIMFTNDNFVHYPIEKDIFQLPTLMDEYDYDLSMDFDEFDHMLRDDHHKSEVEDTTITWSPTSSLNSDLSSNQKPLTLPHQGMEIENQVSLPHMLEALGEAIFQGEKPLAKVIMRCIMQKVSPISEPLERLAFYLCQDMMKTSQGDCCYLTQEASKNFEATFKAFYQGLPHGKFAHFVANLAIIEALPHDCEVIHIVDFDMGEGSQWPPLIEAIATLHKTLKLTSIKWGEESSEGVCVSSPWRFEGIRRDLYEHARSCGVKLVVEGKGIEEVVSELKKMNKRGGRREFLAFNCMVDLPHMGRGRSRKHVMEFLDLIKSCGCKGVVTFGDGRVCEELENDDLEFRSFFERHLVHYKALLESVESHFPNQFLDARTAMECLFVAPYVSSLAWLQKWEEIIEDSYFKTEIGLEGCGLSNAILMEVKEMLNGCEEGLLYQARIEGKNCDNQLILEWKGIQLVRVSIWRN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01932 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 524 IPR005202 -
Cca01g01932 525 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 27 524 - -
Cca01g01932 525 Pfam GRAS domain family 153 524 IPR005202 -
Cca01g01932 525 ProSiteProfiles GRAS family profile. 142 524 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01932 Cca-Chr1 45163439 45165122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01932 146 428 GRAS Transcription Factor Family AT3G03450 25.338 4.13e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca01g01932 GRAS 4.1e-40 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01932 - - gmx:100791800 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01932 01 45163439 45165122 Cca01g01932 01 45163439 45165122 ECH