Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01931 ATGGCTCCAAAAACTCTTTTTGGTCTCCTCATCTTTCTCATTCTCCTAGTTTCTTCCACTGCTTTTTCCTTCCAATTCCATGGCTTCAATAACACAAAAAACAATCTCACCCTTGAAGGGGATTCCAAAGTTGTGGAACCCCAAGGCACACTTAAACTCACCGAAAGAGTGAACAATATTTTTGGCCATGCATTCTACAACGAACCCATCAAAATGATTGAGCAAACAAATGCTTCATCACCCCAACCAAAAGTTTCTTCCTTTAGCACATGCTTTGTTTTCTCAATTGTGTCACCAAGCTCAGGCCTTGGTGGCTTTGGTCTTGCCTTCACCATAGCTCCCAAAACCCATTTCCCAGAAGCTGAAGGTGGCCATCTTCTTGGTCTTTTCAACTCTGCTAATGACATGAACGCCTCAAATCATATCTTGGTGGTTGAATTTGATACAGTGAATGGCCACAAAGGTGAATTTGACACTAAAGGAAACCATGTTGGCGTGAACCTAAATGGCATGCTCTCAAGTACAATGGAGCCTGCAGCATACTTTAAAAGAGGCACAAAGGAAGAGTTCAACATGGAGGAGGCTGATGCTGTTTGTGCTTGGATTGAATATGATGGTGAAACAGAAATTTTGAATGTCACAATAGCACCTTTCAAAGAACCTAAACCAAGCAAGCCACTTATATCCGAATTCATTGACATCAAATATGTTATGAGGGAAAACATGTATTTTGGTTTCTCAGCATCAACAGGTAAGATGAAAGCAAGCTCTCATTATATTCTAGGGTGGAGTTTTTCAGTGAATGGAGTAGCTCCTCCACTCAATGTTCCACTCCTTCCAAAGCCACCACCAAAGGAGAAAGATTCATCCTCTTTTCCTTGGGTCAAGGTTGTAATTTCCATCTTGTCTGCTTTGACATTTACCTTGTTGTGTCTTTTATTTCTTGTGACATACAAGAGATACATGAGATTTGAAACACTTGAGGACTGGGAGATGGATTGTCCTCATAGGTTCAATTATAGAGATCTTCACATAGCAACAAAGGGGTTCACAGAGAGCCAGCTGATAGGAGTTGGAGGATTTGGTTCTGTGTACAAAGGTGTATTACCTAGTACAGGATCTGAGGTTGCTGTTAAAAAGATCATGAGAAGTCCAATGCAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTCAACCTTCAAGGGTGGTGCAAGCACAAGAATGATCTACTCCTAGTGTATGACTACATTCCAAATGGAAGCCTTGACTCTCTCTTGTTCAACAAAAATTTTGCTTTGGATTGGGACAAGAGATTCAACATTCTCAAAGGTGTGGCTGCAGGATTGTTGTATCTTCATGAAGAGTGGGAGAAAGTGGTGATCCATAGAGATGTGAAGTCTAGCAATATTCTAATAGATGGAGACTTCAATGCTCGTTTGGGTGACTTTGGACTAGCGAGGCTTTATAGCCATGAACAAGTGTCACATACAACAAGTGTTGTTGGCACCATAGGGTATATCGCACCAGAGTTAACTAGGACAGGAAAAGCATCTGCAAGCTCTGATGTGTATGCCTTTGGGGTCCTACTCCTTGAAGTGGTGGCTGGAACAAGACCTGTTGAGTCATCAGGTCAGTTTTTGTTGGTGGATTGGATTCTTGAGAATTCCCAACTGGGTCAGATTCTTGAAGTGGTTGATCCTAAGCTAGGTTCAGTTTATGATGAGGAACAAGTGGAGTTGGTGCTCAAACTGGGTCTCTTGTGCACTCAACACAAAGCTGATCATAGACCCTCTATGAAACAATTGACTAGGTACCTAAACTTTGATGACCCTCTTCCTCATACCTCTGAGTGGAGACACTGTGATTCTCAAAGCAGCACAACAAGCTTTGGTTTCTTAGAAGCCATGAATTCGGGTATGATTGCATCATCACAGAGTTTATCCTCCATTGGCAGGAGTACAATGTCAATAGAAGATTGTAGATAG 2016 0.4182 MAPKTLFGLLIFLILLVSSTAFSFQFHGFNNTKNNLTLEGDSKVVEPQGTLKLTERVNNIFGHAFYNEPIKMIEQTNASSPQPKVSSFSTCFVFSIVSPSSGLGGFGLAFTIAPKTHFPEAEGGHLLGLFNSANDMNASNHILVVEFDTVNGHKGEFDTKGNHVGVNLNGMLSSTMEPAAYFKRGTKEEFNMEEADAVCAWIEYDGETEILNVTIAPFKEPKPSKPLISEFIDIKYVMRENMYFGFSASTGKMKASSHYILGWSFSVNGVAPPLNVPLLPKPPPKEKDSSSFPWVKVVISILSALTFTLLCLLFLVTYKRYMRFETLEDWEMDCPHRFNYRDLHIATKGFTESQLIGVGGFGSVYKGVLPSTGSEVAVKKIMRSPMQGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLVYDYIPNGSLDSLLFNKNFALDWDKRFNILKGVAAGLLYLHEEWEKVVIHRDVKSSNILIDGDFNARLGDFGLARLYSHEQVSHTTSVVGTIGYIAPELTRTGKASASSDVYAFGVLLLEVVAGTRPVESSGQFLLVDWILENSQLGQILEVVDPKLGSVYDEEQVELVLKLGLLCTQHKADHRPSMKQLTRYLNFDDPLPHTSEWRHCDSQSSTTSFGFLEAMNSGMIASSQSLSSIGRSTMSIEDCR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01931 671 CDD lectin_legume_LecRK_Arcelin_ConA 22 269 IPR001220 GO:0030246
Cca01g01931 671 Gene3D Phosphorylase Kinase; domain 1 335 426 - -
Cca01g01931 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 284 IPR013320 -
Cca01g01931 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Cca01g01931 671 SMART serkin_6 350 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01931 671 CDD STKc_IRAK 356 617 - -
Cca01g01931 671 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 10 661 - -
Cca01g01931 671 Pfam Legume lectin domain 23 277 IPR001220 GO:0030246
Cca01g01931 671 SUPERFAMILY Protein kinase-like (PK-like) 336 642 IPR011009 -
Cca01g01931 671 Pfam Protein kinase domain 350 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01931 671 PANTHER - 10 661 - -
Cca01g01931 671 Gene3D Transferase(Phosphotransferase) domain 1 427 632 - -
Cca01g01931 671 ProSiteProfiles Protein kinase domain profile. 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01931 671 Gene3D - 19 272 - -
Cca01g01931 671 ProSitePatterns Protein kinases ATP-binding region signature. 356 380 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01931 Cca-Chr1 45122152 45124167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01931 15 633 Receptor kinase-like Gene Family AT3G08870 50.237 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca01g01931 Pkinase 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01931 - - gmx:100792854 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01931 01 45122152 45124167 Cca01g01931 01 45122152 45124167 ECH