Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01928 ATGGGAGAAAGCCGTGTCTCCCAATGTTCCAAGACATGTACAAGCCCTTCTAACATTGATGAAGAAGAGTGTGAAAGCGAGGCCAATGAAGATCAAAGTAAGCAAAACAACAATGGAGGAAGCTCAAGTAACAGCACAGTGGAAGAGAGTGAGAAAAAGATAAGGCCTTATGTTAGATCCAAGTTGCCAAGGCTTAGGTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAACGACTTGGAGGACAAGAGAGAGCAACACCAAAATTGGTTCTTCAATTAATGAATATCAAAGGTTTAAGTATTGCCCATGTCAAGAGTCATTTACAGATGTTTAGGAGCAAAAAGGTGGATGATCGAAATCAAGTATTTGCCGATCACAATAGTCTTGTTGAAATTGGAGACAAAAATGTTTATAATCTTAGCCAGCTTTCCATGATTCAAGGGTATAATCCGAGTCAAAGTAGTTCATCCTACAACTACCCGAATAATTATTCAAGCTATAGATTCGGGGATGCTTCTTTTGGTGTCTACGAAAATGTGCTACAAAAACCTTTGGATTGGACCAATGGAATTTCTCGGGCAGGTTCATCCATTTTTGGTGAACAATCAACAAGTAAAATCTGTGAACCAAAAGATGAGTTTCTCTCATTTGGTGCTCATGATCAACCTCTAGGCACAATCACAAGATTATTTAGCCACGTTGATAACATGCAATCAAACAATATGCAACTTAGAGCACAAAATCTCATGCCTAAAAATCTACCACAATTGAAGACATTGAAAAGAAAGGTTCCAGATACAGCACCAGATTTGGATCTGTCACTAAAACTAAACTCAAAGATGGATTCTGAAGGAACCTTGGAGGACCACGAAGTAATTGACAGCAACCTATCACTCTCATTATGCTCTCAGTCCTCATCCTCTAATCATAGCATTAGGTTGAAGGAAGCACAAGATCGAAGTGAGGAACGCGGGAAAAGGGCCAGTACCCTAGATCTGACTACATGA 1017 0.3992 MGESRVSQCSKTCTSPSNIDEEECESEANEDQSKQNNNGGSSSNSTVEESEKKIRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMFRSKKVDDRNQVFADHNSLVEIGDKNVYNLSQLSMIQGYNPSQSSSSYNYPNNYSSYRFGDASFGVYENVLQKPLDWTNGISRAGSSIFGEQSTSKICEPKDEFLSFGAHDQPLGTITRLFSHVDNMQSNNMQLRAQNLMPKNLPQLKTLKRKVPDTAPDLDLSLKLNSKMDSEGTLEDHEVIDSNLSLSLCSQSSSSNHSIRLKEAQDRSEERGKRASTLDLTT 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01928 338 MobiDBLite consensus disorder prediction 311 338 - -
Cca01g01928 338 MobiDBLite consensus disorder prediction 1 19 - -
Cca01g01928 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 119 IPR017930 -
Cca01g01928 338 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 63 118 IPR006447 GO:0003677
Cca01g01928 338 Pfam Myb-like DNA-binding domain 65 113 IPR001005 -
Cca01g01928 338 PANTHER - 190 337 - -
Cca01g01928 338 PANTHER - 7 192 - -
Cca01g01928 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 190 337 IPR044848 GO:0003700
Cca01g01928 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 192 IPR044848 GO:0003700
Cca01g01928 338 MobiDBLite consensus disorder prediction 31 47 - -
Cca01g01928 338 MobiDBLite consensus disorder prediction 1 55 - -
Cca01g01928 338 Gene3D - 62 119 - -
Cca01g01928 338 SUPERFAMILY Homeodomain-like 62 117 IPR009057 -
Cca01g01928 338 MobiDBLite consensus disorder prediction 316 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01928 Cca-Chr1 45065387 45067507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01928 27 120 G2-like Transcription Factor Family AT2G42660 60.638 1.56e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca01g01928 Myb_DNA-binding 8.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01928 - - gmx:100801120 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01644 07 41768013 41769782 Cca01g01928 01 45065387 45067507 ECH
Cca01g01928 01 45065387 45067507 Cca01g01928 01 45065387 45067507 ECH