Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01923 ATGGCGAGTGGCACAGCGTACCAAGAACACCTTCCAGCATCACCGGAGTGGCTGAACAAAGGCGACAACGCGTGGCAGCTAACAGCGGCGACTCTGGTGGGCCTGCAGAGCATGCCGGGCCTGGTGATCCTGTACGCGAGCATAGTAAAGAAGAAATGGGCCGTGAACTCGGCCTTCATGGCCCTGTACGCCTTCGCCGCAGTGCTCATATGCTGGGTCCTGCTGTGTTACCGCATGGCCTTCGGCGACGAGCTCCTCCCGTTCTGGGGCAAGGGTGCGCCCGCACTGGGCCAGAAGTTTCTCATAAACCAGGCCCGGGTGCCCGAAAGCACGCACTTCCACAAGAATGGGACCCTGGAAAGCCCAACTTCGGAGCCCTTGTTCGCGATGGCTTCGCTTGTGTACTTTCAGTTTACTTTCGCTGCTATTACGATGATTCTGTTGGCGGGGTCGGTTCTTGGGAGAATGAACATCAAGGCGTGGATGGCGTTTGTGCCGCTTTGGCTTGTTTTTTCGTACACTGTTGGGGCCTTTAGTCTTTGGGGTGGTGGCTTTCTCTACCATTGGGGTGTCATTGATTACTCTGGTGGTTACGTTATTCATCTTTCATCTGGTGTTGCTGGTTTCACCGCTGCTTACTGGGTTGGGCCAAGGTTGAAGAGTGACAGGGAGAGGTTCCCACCGAACAACGTGCTGCTAATGCTAGCGGGTGCGGGGTTGCTGTGGATGGGGTGGTCAGGGTTCAACGGAGGAGCACCGTATGCAGCGAACATAGACTCTTCGATCGCAGTGCTCAACACTAACATTTGTGCCGCCACTAGCCTCCTTGTCTGGACCTCTCTCGATGTCATCTTCTTCTCCAAGCCTTCTGTCGTTGGAGCTGTTCAGGGCATGATGACTGGCCTCGTTTGCATCACCCCAGGAGCAGGGCTTGTGCAATCTTGGGCGGCTATAGTGATGGGAGTACTATCAGGTAGCATTCCATGGGTCACCATGATGATCCTTCACAAGAAGTCAAGCCTTCTACAGAAGGTAGATGACACCCTAGGAGTGTTTCACACACATGCTGTGGCTGGTCTTTTGGGTGGTCTCCTCACTGGTCTCTTAGCAGAACCTCAGCTTTGTAAACTCTTATTGCCTGTGACCAACTCAAGGGGTGCCTTCTATGGTGGTGATGGTGGTGTTCAGTTTTTGAAGCAAATAGTGGGAGCACTTTTCATTGCTGGATGGAACTTGGTCTCCACCACACTCATTCTTCTGGCCATACAGCTCTTCATACCCTTGAGGATGCCCGACGAGCAGCTCGAGATCGGTGACGACGCCGTCCACGGCGAAGAAGCTTATGCCCTCTGGGGTGATGGCGAAAAATATGACCCTACAAGGCATGGATCTTTAAGAGTCGATAAAGCTGCAGCATCACCTTATGTTAATGGAGCTAGGGGTTTGACCATTGATTTATGA 1461 0.5325 MASGTAYQEHLPASPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLLCYRMAFGDELLPFWGKGAPALGQKFLINQARVPESTHFHKNGTLESPTSEPLFAMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLVFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGVAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIDSSIAVLNTNICAATSLLVWTSLDVIFFSKPSVVGAVQGMMTGLVCITPGAGLVQSWAAIVMGVLSGSIPWVTMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPQLCKLLLPVTNSRGAFYGGDGGVQFLKQIVGALFIAGWNLVSTTLILLAIQLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGSLRVDKAAASPYVNGARGLTIDL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01923 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005887
Cca01g01923 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005887
Cca01g01923 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005887
Cca01g01923 486 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005887
Cca01g01923 486 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005887
Cca01g01923 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cca01g01923 486 SUPERFAMILY Ammonium transporter 17 430 - -
Cca01g01923 486 PANTHER AMMONIUM TRANSPORTER MEP2 1 483 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca01g01923 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca01g01923 486 Gene3D Ammonium transporter AmtB like domains 2 451 IPR029020 -
Cca01g01923 486 PANTHER AMMONIUM TRANSPORTER 1 483 - -
Cca01g01923 486 TIGRFAM amt: ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01923 Cca-Chr1 45002635 45007596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01923 130 486 Inorganic Solute Cotransporters AT2G38290 78.552 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01923 K03320 - gmx:100798599 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01923 01 45002635 45007596 Cca01g01923 01 45002635 45007596 ECH