Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01918 ATGGATCACAACACTGCCATCAGTAACCCTGCCTCATCTGCAGGCTCATCTTCAAAGGCAAGCAGAAACAAAGAGCTCAAAAAGGGTGCCAAGAAATGCAAAGGAGTGAAACTTTCCACCGACCCACAAAGCGTTGCAGCAAGAGAACGAAGGCACAGAATCAGTGACAGGTTCAAGATCTTGCAAAGCATGGTCCCTGGTGGGAGCAAGATGGACACAGTGTCCATGTTGGAGGAAGCCATTCAGTATGTGAAGTTTCTCAAGGCACAGATTTGGCTTCACCAAACCATGATAAACTTTATGGATGATAATAGTATTAATGACTCACCCTCTCCTTTGTACCTTAGTGAGTGTTGTTTCCCTTCTCAGCAACACTTTGTTTACCCTCAGCAGAATTCTTCACTTGATTATGGCGTGCAGAATGTACCACACGTGCCACTAGCACAATGCAGCTTCCAAGGTGAAGACACAACCTACTTTGATGCCTCTTTGCAACATTGGCCAGCTTAA 510 0.4549 MDHNTAISNPASSAGSSSKASRNKELKKGAKKCKGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKFLKAQIWLHQTMINFMDDNSINDSPSPLYLSECCFPSQQHFVYPQQNSSLDYGVQNVPHVPLAQCSFQGEDTTYFDASLQHWPA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01918 169 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 17 154 - -
Cca01g01918 169 Pfam Helix-loop-helix DNA-binding domain 48 87 IPR011598 GO:0046983
Cca01g01918 169 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g01918 169 Gene3D - 42 96 IPR036638 GO:0046983
Cca01g01918 169 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Cca01g01918 169 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 17 154 IPR045843 GO:0003700|GO:0006355
Cca01g01918 169 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 98 IPR036638 GO:0046983
Cca01g01918 169 SMART finulus 44 93 IPR011598 GO:0046983
Cca01g01918 169 MobiDBLite consensus disorder prediction 1 50 - -
Cca01g01918 169 CDD bHLH_AtIND_like 39 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01918 Cca-Chr1 44896893 44897675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01918 32 112 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.852 1.31e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g01918 HLH 4.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01918 - - pvu:PHAVU_010G073400g 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01918 01 44896893 44897675 Cca01g01918 01 44896893 44897675 ECH