Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01903 ATGTCACCATGTAGTGGAAGCTATTCATTGATCCAACCACTATATATAATTAGAAGAGCAGGAAAATGTCAGCAGAAGGAAACAGGAAATAAATCGAGTAAAGGTTATCAAATGTTTCAATTGAGAAACAATAGTGAAAATTGGTGGTCTTTGATCGCGGGGAGGATTCCGGGGAGGACAGACAACCAAGTGAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTAAGAAGAAGAAAAAGAGTAAAGTGGGTGTTCCTCCAAAATCTATCCCTATAGTTGAACCAAAGGGTACGGATCAATATTCATCAGAATTCGTTGGTGAAGGTGAAAAGCTTGTCCATGAAACTGAAAGCTTGTGTGGTGATCTAATCGACTTCGCGAGCATCATGCATGAGGGGATTATGAATGAGAGTGCCTTTTCTTTTGTTAATAGTAATGTGTTTGATCTATGCACTCCTTATTTCACCGAGGAGTGGTTTTTAGGCCTTTGA 501 0.3932 MSPCSGSYSLIQPLYIIRRAGKCQQKETGNKSSKGYQMFQLRNNSENWWSLIAGRIPGRTDNQVKNFWNTHLSKKLGVKKKKKSKVGVPPKSIPIVEPKGTDQYSSEFVGEGEKLVHETESLCGDLIDFASIMHEGIMNESAFSFVNSNVFDLCTPYFTEEWFLGL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01903 166 ProSiteProfiles Myb-like domain profile. 49 72 IPR001005 -
Cca01g01903 166 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 76 IPR017930 -
Cca01g01903 166 Gene3D - 19 91 - -
Cca01g01903 166 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 40 87 - -
Cca01g01903 166 SUPERFAMILY Homeodomain-like 42 76 IPR009057 -
Cca01g01903 166 CDD SANT 49 71 IPR001005 -
Cca01g01903 166 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 40 87 - -
Cca01g01903 166 Pfam Myb-like DNA-binding domain 44 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01903 Cca-Chr1 44596223 44600451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01903 47 82 MYB Transcription Factor Family AT5G14750 80.556 1.41e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g01903 Myb_DNA-binding 1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01903 K09422 - ncol:116265699 65.4698